Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 412 7e-110 seq4 343 3e-89 >seq8 Length=2103943 Score = 412 bits (456), Expect = 7e-110 Identities = 618/862 (72%), Gaps = 32/862 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||||||||| |||||||| ||| Sbjct 373459 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAGATTGATCTG 373518 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 373519 TCCAAGGATCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 373577 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| ||||||||||| ||||| ||||| |||||||||| | | Sbjct 373578 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 373637 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 || | ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 373638 CTTTAGTGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 373697 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| | || |||||| ||| Sbjct 373698 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGATACCTACATCAAGGAGAA 373754 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 373755 CAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 373814 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| |||| |||||| || | | || | | | || | | || | ||||| | Sbjct 373815 CGACTGGGCCATCAAGTGGATCCAG-GACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTG 373873 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| ||||||| ||||| ||||||||| || ||||| ||||||||||||||||||| Sbjct 373874 CCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 373933 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || |||| || ||||| || || ||||| || ||||| |||||| | |||||| Sbjct 373934 AGAAGCGAGGTCTC-ATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 373992 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || ||||| | |||||||||||||| ||| ||| ||||||| | || || Sbjct 373993 GGTCTGCACACCGACTTTGCCTGCCTGCTGCACTC---TCACCTCAAGAACCGCGCCAGC 374049 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 ||||| | |||| | ||||||||| || || || || ||| | |||||| | || Sbjct 374050 AAGGAAGTGATCCGTGACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACC 374109 Query 42951 CAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| || |||| | ||||||||| | |||| ||| ||||||| | Sbjct 374110 GAGGCTCT-CCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 374168 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACAC 43063 || ||||||||| | ||| || || | | |||| || || ||||||| | Sbjct 374169 GTTCGTCGCCGATCGTCTGCT-TG-----TCGCTCTCGGCAACGAGAAGATCTACAAGTC 374222 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | |||||||||||| ||||||||||| || | | |||||||||||||| ||||| Sbjct 374223 TGCCAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGA 374282 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||||||||||| Sbjct 374283 GAAGCGCGTCGCCGACTACCAG 374304 >seq4 Length=2906552 Score = 343 bits (380), Expect = 3e-89 Identities = 1112/1711 (65%), Gaps = 53/1711 (3%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||| || | || || | ||||||| || | |||||||||||||||||||||| Sbjct 974836 ACGGTGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTG 974777 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| | || ||||||| || | ||| ||| | |||| Sbjct 974776 AGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGG 974724 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 |||| || || ||| ||||||||| ||| || | ||| | | || || Sbjct 974723 A--TCCTT---CATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCA 974669 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || ||||| || | | |||||| ||||| | | |||||||| | || |||| Sbjct 974668 GCTGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGGGCCTTG 974609 Query 243977 AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 | | ||||||| ||||||||| | ||||| || | | |||| || | Sbjct 974608 ATATCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTC 974549 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTT 244092 |||| |||| ||| ||||| | |||| ||| || ||||| | || Sbjct 974548 TTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TT 974493 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || || || ||||| || | || || || |||||||||| |||| || ||||| Sbjct 974492 GACAACTTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTC 974433 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAG 244212 || || ||| |||||||||| ||||| | ||| || ||||| ||||| || | | || Sbjct 974432 GAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAG 974373 Query 244213 CAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACAT 244272 || ||||| | | |||||| || ||| | ||||| || ||| ||||||| Sbjct 974372 CAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAG 974313 Query 244273 GCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC-TGA 244331 | | ||||| | |||| |||||||||| || || || | |||| | || Sbjct 974312 GTC--AGAGGGC-------TTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGC 974262 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCG 244390 || | | |||| | | | ||||||||| || || ||| | || | || | Sbjct 974261 AGGTGAT-CCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCC- 974204 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 || ||||| || | |||||||||||| |||||| |||||||| | || |||| | Sbjct 974203 TCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGA 974144 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||||| |||| || | ||| ||||||| || ||||| || || | || Sbjct 974143 GACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCA 974084 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||||| ||| ||| ||||| | ||| || | || ||||| ||| | || Sbjct 974083 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGATTGACATCA 974024 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | |||||||||||||||| | || | ||| || ||| || |||||| Sbjct 974023 ATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCA 973964 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 || | | ||| | | || ||| || || | | |||||| | |||| Sbjct 973963 TA-------GCAGCCTTCG---TTGTAATCGACATAAGCAGG--GAGGGCCAAAGAGGCC 973916 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||| || || ||||| || | ||||| || |||||||||||||||||| Sbjct 973915 AAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTG 973856 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 || |||||| ||||||| || || ||| |||| ||||||||| ||||||||| Sbjct 973855 GAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAG 973796 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 ||||||||||| || ||||| |||||| | |||| | | ||| || | | Sbjct 973795 AGCATGAAGGGGTTACCAGTCTCAGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGG 973736 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 || || ||| ||||| | ||||| ||| || |||| |||||||| Sbjct 973735 GCGCGGATGGTCGTGCGACCACGTCCCTCCTTCTCATACTTCTCATACAAAGCCTCGAAT 973676 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACT 244988 || ||| || || | ||||| ||||| || | |||||||| || |||| | Sbjct 973675 TCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTG--GGGCACATCAGCGTCCAGT 973618 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 | | | | || | || ||||||||| ||||| |||||||| || |||| | || Sbjct 973617 CCAAGTTCTTTTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGT 973558 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGT 245108 | | || | ||| ||| ||| |||||| | || || | || |||||||||| Sbjct 973557 CACGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGT 973498 Query 245109 CGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGT 245168 || ||||||||||||| | ||||| || | ||| || || |||||||| || ||||| | Sbjct 973497 CGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGAT 973438 Query 245169 CCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 | | ||| ||| | || | |||||| | || || | || | || ||||||||| Sbjct 973437 CGA-CAT-ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGT 973380 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAG 245286 ||||||||||| ||||| | ||| || | | || | | || | || ||| | Sbjct 973379 ACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCAAT 973320 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 || || || |||||| || | ||| || |||| | ||||| || ||||| || Sbjct 973319 ACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCGTAGATACCCTCAAT 973260 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGA 245406 ||| || |||||||| || || ||||| ||||||||||||| || ||| | | | Sbjct 973259 GCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTACCTGC 973200 Query 245407 GTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| |||||| ||| ||||| ||| Sbjct 973199 GTTGAACAGGGTGGGGGAGGCATGGGTGAAG 973169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338456332880