Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 116 9e-21 seq3 98.7 2e-15 seq8 96.9 8e-15 >seq7 Length=2414983 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||||| Sbjct 116160 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 116101 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || ||||| ||||||||||| || | || Sbjct 116100 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 116041 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | ||||| || || || | |||| || || || Sbjct 116040 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCCACC 115981 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 115980 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 115934 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || || || || || | || || || |||||| Sbjct 819870 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAG 819811 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||||| || || ||| || || || || |||||||| || | || || Sbjct 819810 ATCAATCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 819754 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || |||||||||||||| || || |||||| Sbjct 819753 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 819694 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 819693 ACGAAAATCTGCAT 819680 >seq3 Length=3158035 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 288275 TCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTC 288334 ||||||| | || ||||| || |||||| | ||| | |||||||| | || || | Sbjct 1903389 TCGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTAC 1903448 Query 288335 CTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTT 288394 | |||||||| | ||||| || | || || || ||||| ||||| || || | | Sbjct 1903449 CAGCGAAGATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTGGACT 1903508 Query 288395 TCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAG 288454 | ||||| || || | ||| ||||| || | || || || ||||| ||||| |||| Sbjct 1903509 TGACGTTGTCGATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGAG 1903568 Query 288455 TCTTGACGAATATCTGCAT 288473 |||||||||| ||||| || Sbjct 1903569 TCTTGACGAAAATCTGTAT 1903587 >seq8 Length=2103943 Score = 96.9 bits (106), Expect = 8e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | || ||| |||| || | | | || ||||| || | || |||| Sbjct 374096 AAGAGTTCTTGACCGAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGA 374155 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTAT-CTTCACGGCACTCGGTTATGAGAAAGTG 269235 | || || || || ||||| || |||||| | ||| || | ||||| | ||||| | Sbjct 374156 AGCAGTACATTGAGTTCGTCGCCGATCGTCTGCTTGTCG-CTCTCGGCAACGAGAAGATC 374214 Query 269236 TACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAAC 269295 ||||| || || ||||||| ||| ||||| ||||| |||| || ||||| ||| Sbjct 374215 TACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAAC 374274 Query 269296 TTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATGAA 269342 |||||||| ||||| ||| |||||| || ||||||| ||||| Sbjct 374275 TTCTTCGAGAAGCGCGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 374321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653447797714