Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8 152 5e-32 seq4 147 2e-30 seq7 100 3e-16 seq3 84.2 2e-11 >seq8 Length=2103943 Score = 152 bits (168), Expect = 5e-32 Identities = 500/765 (65%), Gaps = 29/765 (4%) Strand=Plus/Plus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| ||||| |||||| | ||| || Sbjct 373552 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGC 373611 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 || || ||| ||||| ||||| | | || || | ||| || | | ||||| | Sbjct 373612 ATTGTCAACGAGAACCTGGTCGAGCGCTTT-AGTGGCGAGGTCCAGATCCCCGAGGCTCG 373670 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 || ||| || || || | | || ||| | | ||| | |||| ||| ||||| Sbjct 373671 ATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCT 373730 Query 52265 CATTGAGCAGCTG-ATAAAAGATGAGCA-CGAGCGCGACACGCTGCTGAATGCGTTCGAG 52322 ||| || | || || || || || || | ||||| | || | || || | ||| Sbjct 373731 CATCGAT-ACCTACATCAAGGA-GAACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAG 373788 Query 52323 CACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC 52382 | | || ||| ||||||| ||||| | ||||| || ||||||||| || | | | | Sbjct 373789 ACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAAC 373848 Query 52383 GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 | | | ||| ||||| |||| ||||| ||| || ||||| | || || ||| Sbjct 373849 TCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGT 373908 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||||||| ||||||| | | || | | ||| | ||||| || ||||| || | Sbjct 373909 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCC 373968 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT--------CT 52554 |||||| | || || || ||||| || |||||||| |||||||| ||||| || Sbjct 373969 AACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCCTGCCTGCTGCACTCT 374028 Query 52555 -ACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG 52613 || ||||| |||| | | | || || || || ||| ||| ||| Sbjct 374029 CACCTCAAGAACCGCGCCAGCAAGGAAGTG-ATCCG----------TGA-CATCATCACC 374076 Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || || || || | ||||| || || | || || || || || || ||| Sbjct 374077 GATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAGGCTCTCCCTTGCGCCCTCCTTGGC 374136 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||| | | ||| ||||||| ||||| || || ||||||||| | || Sbjct 374137 ATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTCGCCGATCGTCTGCTTGTCGCT 374196 Query 52734 CTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTC 52792 ||||| || | | ||| || ||| || ||| || || || || ||| | |||||||| Sbjct 374197 CTCGG-CAACGAGAAGATCTACAAGTCTGCCAACCCCTTCGACTTCATGGAGAACATTTC 374255 Query 52793 GCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | |||||||||||||| ||||||||||| |||| ||| || Sbjct 374256 TCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTA 374300 >seq4 Length=2906552 Score = 147 bits (162), Expect = 2e-30 Identities = 594/920 (65%), Gaps = 27/920 (3%) Strand=Plus/Minus Query 153390 GGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGA 153449 ||||||||||| | || |||||||| |||||||||| ||| || || |||||||| Sbjct 974134 GGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACACCAATGGGTCGG 974075 Query 153450 TGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGATAATTT 153507 || | ||||||| | || ||| || | || ||||||||| ||| || || | Sbjct 974074 TGGCGCATGTTGCTGTTGCGGGC-CTC-CTGGACAGGGTAGTGATTGACATCAATGATCT 974017 Query 153508 TGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCA 153567 ||||||||||||| || ||||| || || | | | ||| |||| || |||||| Sbjct 974016 TGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGC 973957 Query 153568 TTTCGTCG---ACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCC 153623 ||||| | || | || ||| | | ||| | ||| |||| || || || || Sbjct 973956 CTTCGTTGTAATCGACATAAGCAGGG----AGGGCCAAAGAGGCCAAGTTGCAAACAGCA 973901 Query 153624 GTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACG 153683 ||| || | | | ||||| | ||||||| |||||||||| || ||| Sbjct 973900 ACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTT 973841 Query 153684 CCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 153743 |||| || | ||| ||||| ||||| ||||| || || ||| |||||||| | || Sbjct 973840 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTA 973781 Query 153744 CCGGTCTCGACTTGCGTTTCGACGAT--AAACCTATGCAGGTCCTGCGCTCGCACCCGCT 153801 || ||||| || | ||| | ||| || | | ||| | ||| || || | | Sbjct 973780 CCAGTCTCAGTCTGGGCTTCCAGGATGGAATACCA--CAGCTTCTGGGCGCGGATGGTCG 973723 Query 153802 GCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGC 153861 ||| || ||||| |||| || ||| |||| ||| || || ||||| |||| Sbjct 973722 TGCGACCACGTCCCTCCTTCTCATACTTCTCATACAAAGCCTCGAATTCCTCGCCATAGC 973663 Query 153862 AGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGA 153921 |||| || ||||| || || | | || |||||||||| ||| || | | Sbjct 973662 AGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTCCAAGTTCTTTTCAA 973603 Query 153922 CGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAAT 153981 | || |||||| ||||| || | |||||| || | | ||| || || | | Sbjct 973602 CACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACGGGCGCGGACCT 973543 Query 153982 CCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGGCGTGCCAGGG 154039 | ||| ||| ||| || | |||| || | | ||| ||||||||||||||| Sbjct 973542 CTTCCTTGCCGTGGTT--CTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAGGG 973485 Query 154040 TTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCAC 154096 || | ||||| ||| | |||||| |||| || || ||||||||||| | | | Sbjct 973484 CTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGATCGACATATCTGGC 973425 Query 154097 CATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATT 154156 | |||||||| || || | |||||| | ||| | | ||| |||||||| | Sbjct 973424 AGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGC 973365 Query 154157 GATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACT 154215 || | |||| ||| || | | || ||||| | |||||| || || ||| | || Sbjct 973364 AATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCCAATACCACCAGCCAT-CT 973306 Query 154216 TTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGG 154274 | || || || || ||| ||| || |||||| || || ||||||||||| Sbjct 973305 TGGAAATCATGGCACATGTC-TTCAGAGTGTCGTAGATACCCTCAATGCTATCGTCCTTC 973247 Query 154275 ACGCCGAGCAAGAAACACGA 154294 | | ||| |||||| || || Sbjct 973246 ATGTCGACCAAGAAGCATGA 973227 >seq7 Length=2414983 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || ||| || ||||||||||| || || | Sbjct 116127 GACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCG 116068 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || |||||||| ||||| ||||| || || || ||||| ||| || || | | Sbjct 116067 AAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACA 116008 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||| |||| ||||||||||||| || | || || || || || || || Sbjct 116007 TTGT-CGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 115949 Query 138600 TACAAAAATCTGCATGG 138616 || || || ||||||| Sbjct 115948 GACGAAGATTTGCATGG 115932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 819906 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 819847 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || ||||| | |||| | ||||| |||||||| || Sbjct 819846 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 819787 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||||| |||||||| Sbjct 819786 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCAC 819728 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||| || || || || || || || ||||||||||| Sbjct 819727 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 819680 >seq3 Length=3158035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 || ||| || |||||||||||||||| || | ||| || || || ||||| | | Sbjct 1903396 CTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACCAGCGAA 1903455 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||||| ||||| ||||| || || || || |||||||| ||| | || | || | | Sbjct 1903456 GATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTC-CTGAATCTTGGACTTGACGT 1903514 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||||| || ||||||| | || | || || || || ||||| || Sbjct 1903515 TG-TCGATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGAGTCTTG 1903573 Query 138601 ACAAAAATCTGCAT 138614 || |||||||| || Sbjct 1903574 ACGAAAATCTGTAT 1903587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262009193360