Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8 149 6e-31 seq7 127 2e-24 seq2 95.1 1e-14 >seq8 Length=2103943 Score = 149 bits (164), Expect = 6e-31 Identities = 405/608 (67%), Gaps = 19/608 (3%) Strand=Plus/Plus Query 46979 CATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGA-AGC 47037 ||||||| | || | ||| ||| ||||| | || |||||| || ||| || ||| Sbjct 373704 CATCCACTCCGAGACCTACTCCCTGCTCATCGATACCTACATCAAGGA-GAACAGCCAGC 373762 Query 47038 A-AGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGG 47096 ||| || || || |||| | |||| ||| || ||| | |||| |||||||| ||| Sbjct 373763 GCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGG 373821 Query 47097 GCCATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCC 47156 ||||| |||| || | || | ||| | | ||| | || || | || || ||| Sbjct 373822 GCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCC 373881 Query 47157 ATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAA 47216 ||| ||||| |||||||| || |||||| | || || | | || | | Sbjct 373882 GCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGA 373941 Query 47217 GGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCAC 47276 || | ||||| || || || ||| ||||||||| ||||| | ||||| || |||||| Sbjct 373942 GGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCAC 374001 Query 47277 ACCAACTTTGCCTGTCT-CT--ACTA-CAACACTAGAGTCGATCAA--AAGTTGGACGTG 47330 ||| |||||||||| || || ||| || | | ||| || | | ||| || ||| Sbjct 374002 ACCGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGCGCCAGCAAG---GAAGTG 374058 Query 47331 CCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAG 47390 | ||| ||||| | |||| || ||| |||||| ||||| || ||||| Sbjct 374059 ATC--CGT----GACATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAG 374112 Query 47391 GCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTT 47450 ||||| || | | | || |||||| | | |||||| ||||||| || || Sbjct 374113 GCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTC 374172 Query 47451 GTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510 |||||||| || ||||| || || | ||||| ||| | | | || || Sbjct 374173 GTCGCCGATCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCCAACCCC 374232 Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 ||||| || ||| | |||||||| |||| |||||||||||||| ||||||||||||||| Sbjct 374233 TTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTC 374292 Query 47571 GGCGAATA 47578 | ||| || Sbjct 374293 GCCGACTA 374300 >seq7 Length=2414983 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | |||||||| || || || ||||| ||| Sbjct 819909 GCACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 819850 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || |||||| |||||||||||||||| || || Sbjct 819849 GAGAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGG 819790 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| Sbjct 819789 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 819730 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| || || || || || || || ||||||||||| Sbjct 819729 ACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 819680 Score = 102 bits (112), Expect = 8e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || || || ||| || || || || ||| Sbjct 116130 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCA 116071 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| ||||||||||||||| ||| || ||| Sbjct 116070 GCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTC 116011 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | | ||| || |||| ||| | || |||||||| || || Sbjct 116010 ACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTC 115951 Query 127097 TTTACAAAAATCTGCATGG 127115 || || || || ||||||| Sbjct 115950 TTGACGAAGATTTGCATGG 115932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Minus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 || ||||| ||||| || | |||| ||||| || | || ||| || || || || Sbjct 116554 CTTTACTGG-CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTT 116496 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 ||| |||| || |||||| || || ||||| || ||||| ||||||| |||||||| Sbjct 116495 GTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTG 116436 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042 || ||||| || |||||||||||| |||| || ||||| ||||| Sbjct 116435 GTCAGGAGGAATACCCTCCTTGTCC-TGATCTTGGACTTGACGTTGT 116390 >seq2 Length=3541710 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || ||||| ||||| Sbjct 89112 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 89053 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || ||||||||||||||| ||| || ||||| | ||| Sbjct 89052 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 88993 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || ||||| ||||| || || || ||| Sbjct 88992 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 88933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500425543120