Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8 250 2e-61 seq7 118 1e-21 seq2 105 7e-18 seq3 93.3 4e-14 >seq8 Length=2103943 Score = 250 bits (276), Expect = 2e-61 Identities = 562/830 (68%), Gaps = 27/830 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | |||||| | ||| || || ||||||||| Sbjct 374285 TTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTG 374226 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || | |||||| ||| | |||||| || |||| ||||| | ||||| |||||| Sbjct 374225 GCAGACTTGTAGATCTTCTCGTTGCCGAG-AG--CGACAAGCAGACGATCGGCGACGAAC 374169 Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798 || ||||| ||| ||| |||| | | || | || || || |||| || || || Sbjct 374168 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCAAGGAGGGCGCAAGGG-AGAGCC 374112 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 ||||| | || |||||| || ||| || ||||||| ||| || | | || Sbjct 374111 TCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATGATGTCACGGATCACTTCC 374052 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| | || | | | || | || || ||| ||||||||| |||| ||| Sbjct 374051 TTGCTGGCGCGGTTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCGGTGTGCAGACCC 373992 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||| |||||| || |||| || |||||||| || || || ||| Sbjct 373991 TCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTG 373932 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| ||| || || ||||||| ||||| ||||| || || || Sbjct 373931 AGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCAACGGCGGCAAAGGCA 373872 Query 133039 ACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 |||||||||| | | || | | ||||| | |||| ||||| | ||||| |||| Sbjct 373871 ACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGG--ATCCACTTGATGGCCCAGTCGG 373814 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| | | ||| || || || || |||||||| || | | || | | || | Sbjct 373813 CCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAG--GTAGCTGCGCTGGCT 373756 Query 133157 AGGAACGC----ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 | | | | |||||| |||||||| || || | || ||||| | ||||||| Sbjct 373755 --GTTCTCCTTGATGTAGGTATCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCC 373698 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 || ||| || |||||||| ||||| || |||||| | ||| || || | || Sbjct 373697 ATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCACTAAAG 373638 Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332 ||||||||||| || |||||||| ||||| || |||||| || |||||||| | ||| Sbjct 373637 CGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGA 373578 Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGAC 133389 |||||| | ||||| ||||||| ||| | ||||||| || ||||||||| Sbjct 373577 GAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGATCCTTGGAC 373518 Query 133390 AGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || || | ||| ||| ||||||| || || |||||||| || |||||||| Sbjct 373517 AGATCAATCTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 373468 >seq7 Length=2414983 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 819677 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 819736 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || |||| ||||| ||||| |||||| | ||| Sbjct 819737 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 819796 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| || || |||||||| || | || |||||| ||||||| Sbjct 819797 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTAC 819856 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || || |||| ||||| Sbjct 819857 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCG 819894 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| ||||||||| |||| || ||| | || Sbjct 115934 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 115993 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| ||||| | ||||| Sbjct 115994 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 116053 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 116054 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 116113 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| || || Sbjct 116114 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCG 116148 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| ||||| | ||||| ||||| | || | || || || |||||||| Sbjct 116412 GACAAGGAGGGTATTCCTCCTGACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAA 116471 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 |||| |||||| | | ||||||||||||||| ||||| ||| || ||||| ||||| || Sbjct 116472 GACGGTCGCACCTTGAGCGACTACAACATCCAGAAGGAGAGC-ACACTGCACTTGGTTCT 116530 Query 38456 GCGTTTGAGAGGCGGCC 38472 |||| | | || |||| Sbjct 116531 GCGTCTTCGTGGTGGCC 116547 >seq2 Length=3541710 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 88934 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 88993 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 88994 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 89053 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 89054 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 89113 Query 38433 G 38433 | Sbjct 89114 G 89114 >seq3 Length=3158035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 || || || ||||| || || ||||| ||||| || || ||| | | || || | || Sbjct 1903587 ATACAGATTTTCGTCAAGACTCTCACCGGCAAGACAATTACCCTTAAGGTGGAATCTTCC 1903528 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | ||||||||||| |||||| | ||||| Sbjct 1903527 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCA 1903469 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| | |||| | | ||||||||| Sbjct 1903468 GCAGCGCTTAATCTTCGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGCGACTACAA 1903409 Query 38423 CATCCAAAAG 38432 |||||| ||| Sbjct 1903408 CATCCAGAAG 1903399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172406113920