Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 147 5e-30 seq3 129 1e-24 seq2 111 3e-19 seq4 86.0 1e-11 >seq7 Length=2414983 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || || || ||||| |||| || |||| ||||| || Sbjct 819888 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCC 819829 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| | ||| || ||||| || |||||||| || ||||| || Sbjct 819828 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 819769 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| |||||||| | |||||| Sbjct 819768 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 819709 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 819708 CCCGTGAGGGTCTTGACGAAAATCTGCAT 819680 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| ||||||| ||||| ||| Sbjct 116142 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCG 116083 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||| || || || || ||||| ||||||||||| || ||||| || Sbjct 116082 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 116023 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || ||||| || ||| ||||| || ||||| | ||||| Sbjct 116022 ATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 115963 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 115962 CCGGTGAGGGTCTTGACGAAGATTTGCAT 115934 >seq3 Length=3158035 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| ||||||||||| |||||||| | || || ||||| || |||||||| ||| Sbjct 1903430 CCGTCTTCCAGCTGCTTACCAGCGAAGATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCT 1903489 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| ||||| || ||||||||| || |||||||| ||| |||||| | ||||||| Sbjct 1903490 TTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTAAGGGTA 1903549 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | ||||| || || | ||| || ||||| Sbjct 1903550 ATTGTCTTGCCGGTGAGAGTCTTGACGAA 1903578 >seq2 Length=3541710 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| ||| || | ||||| ||||||||||| || || ||||| Sbjct 89112 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 89053 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || ||||| || |||||||| || ||||| || || || |||||| || || Sbjct 89052 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 88993 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || |||||||| | ||||| || |||| || || ||||| Sbjct 88992 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 88934 >seq4 Length=2906552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 181/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658 |||||| | ||||||| ||||||||| | || || | || ||| |||| || | | Sbjct 973573 TCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAAAAGAACTTGGACTGGACGCTGATGT 973632 Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718 | ||||| ||| ||||| |||| ||| ||||| || |||||| || | |||| Sbjct 973633 GCCCCAACGAATGCCCTGGCCTTGCTGACTGCTATGGCGAGGAATTCGAGGCTTTGTATG 973692 Query 160719 AAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATC 160778 | | || || || |||||| | | | | | | ||||| | |||||| || Sbjct 973693 AGAAGTATGAGAAGGAGGGACGTGGTCGCACGACCATCCGCGCCCAGAAGCTGTGGTATT 973752 Query 160779 ACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCT 160838 |||||| | ||||| ||| |||| ||||| || |||||||||||| | Sbjct 973753 CCATCCTGGAAGCCCAGACTGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCA 973812 Query 160839 GTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 |||||||| |||||||||||| | |||| Sbjct 973813 ACCGCAAGAGCAACCAGAAGAACCTGGGAA 973842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480704440321