Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03-
07] 63 sequences; 38,329,450 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3 96.9 3e-15
>seq3
Length=3158035
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838
||||| | || || || |||| || | || | ||| || | ||||||||| ||||||
Sbjct 1641363 GGCTCACGCTTCAGTTGTGTCTCGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 1641422
Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898
|||| | |||| | ||| || | || || |||||||| | ||||| |||
Sbjct 1641423 CCCATGACGTGGGTGAGGCTTCCGGGCACCAGGTCGCACACGTGAGCGAGCATGTGTGTG 1641482
Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958
|| || | |||||||||||||| ||||| | ||||| |||||||| | |||| ||||
Sbjct 1641483 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGACCCATGTCGCAGGACCGCTGG 1641542
Query 29959 TAGAGCTGACA 29969
|| ||||| ||
Sbjct 1641543 TATAGCTGGCA 1641553
Score = 82.4 bits (90), Expect = 6e-11
Identities = 249/383 (65%), Gaps = 14/383 (4%)
Strand=Plus/Plus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
|||| || || || || |||||| |||||| |||||||| |||| | ||| |
Sbjct 1641649 TGTGACAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCATGCGCTGAGGATCA 1641708
Query 30068 TGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121
| | || ||| | |||||||| | || || | | ||||| ||||| |
Sbjct 1641709 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATGATCTCGGCG------AGCTGGT 1641762
Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181
| || ||| | || | ||||| ||| | |||| |||||| || || || |||| ||
Sbjct 1641763 CGACGCCCTTGCCGGCATAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 1641822
Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241
|||| || ||||| || || |||||||| || | || | ||| | ||| |||
Sbjct 1641823 ACTGAAAGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 1641882
Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301
| | || || | ||| || ||| ||||||||||||| || || ||| ||| |
Sbjct 1641883 CGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 1641942
Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360
|||| ||| ||||| || |||||| || ||||| | | |||||| |||
Sbjct 1641943 GGGAGGACGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCACGGAGGAAG 1642001
Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383
|||| || || ||||| || ||
Sbjct 1642002 ACCCGTTTTGTTGTGAGCAGAGG 1642024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617286258299
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |