Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 >seq3 Length=3158035 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||| | || || || |||| || | || | ||| || | ||||||||| |||||| Sbjct 1641363 GGCTCACGCTTCAGTTGTGTCTCGAGAGCGTCGATGTGGTCGATGTAGACGTGTGCGTCT 1641422 Query 29839 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29898 |||| | |||| | ||| || | || || |||||||| | ||||| ||| Sbjct 1641423 CCCATGACGTGGGTGAGGCTTCCGGGCACCAGGTCGCACACGTGAGCGAGCATGTGTGTG 1641482 Query 29899 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 29958 || || | |||||||||||||| ||||| | ||||| |||||||| | |||| |||| Sbjct 1641483 AGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGACCCATGTCGCAGGACCGCTGG 1641542 Query 29959 TAGAGCTGACA 29969 || ||||| || Sbjct 1641543 TATAGCTGGCA 1641553 Score = 82.4 bits (90), Expect = 6e-11 Identities = 249/383 (65%), Gaps = 14/383 (4%) Strand=Plus/Plus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 |||| || || || || |||||| |||||| |||||||| |||| | ||| | Sbjct 1641649 TGTGACAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTTCCATGCGCTGAGGATCA 1641708 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCC------TGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 | | || ||| | |||||||| | || || | | ||||| ||||| | Sbjct 1641709 TTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGATGATCTCGGCG------AGCTGGT 1641762 Query 30122 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30181 | || ||| | || | ||||| ||| | |||| |||||| || || || |||| || Sbjct 1641763 CGACGCCCTTGCCGGCATAGTCCGCCTTTGCGTCCACGTACTCGGCGCCAAAGTGCCGCC 1641822 Query 30182 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30241 |||| || ||||| || || |||||||| || | || | ||| | ||| ||| Sbjct 1641823 ACTGAAAGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTCAGGCCGACGCTGT 1641882 Query 30242 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30301 | | || || | ||| || ||| ||||||||||||| || || ||| ||| | Sbjct 1641883 CGAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTGACGCCGACGTCGTTGAGGGCGA 1641942 Query 30302 TGGAGTTTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 |||| ||| ||||| || |||||| || ||||| | | |||||| ||| Sbjct 1641943 GGGAGGACGTGTTGCCCTC-GATGAACCAGAGGAGCTCGGCGATGACGGCACGGAGGAAG 1642001 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 |||| || || ||||| || || Sbjct 1642002 ACCCGTTTTGTTGTGAGCAGAGG 1642024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617286258299