Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03-
07] 63 sequences; 38,329,450 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq8 250 5e-61
seq4 250 5e-61
>seq8
Length=2103943
Score = 250 bits (276), Expect = 5e-61
Identities = 572/855 (67%), Gaps = 20/855 (2%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 373459 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAGATTGATCTG 373518
Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
||||||| || ||| |||| || || || | | |||||| || | || ||
Sbjct 373519 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 373577
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|| | |||| |||||||| ||||||||||| || || |||||||| ||| |||| |
Sbjct 373578 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 373637
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|| | | || || ||| | ||||| || |||||||| |||||||| ||
Sbjct 373638 CTTTAGTGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 373697
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771
|| || | ||||| ||| || || ||| | ||| || ||||| | || |
Sbjct 373698 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGAT-ACCTACATCAAGGAGAACA 373756
Query 25772 CCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830
| || | || | || || ||||| ||| ||| || |||| | ||||||
Sbjct 373757 GCCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCC 373815
Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890
|||||||| ||||||||| | | ||| | || | |||| | |||| ||||| |||
Sbjct 373816 GACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCC 373875
Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950
||||| || || ||||| ||||| ||||||||| | ||||| |||||||||||||||||
Sbjct 373876 TTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAG 373935
Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010
|| || |||||| || ||| ||||||||||||||||||| | |||||||||
Sbjct 373936 AAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGT 373995
Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TC 26068
|| |||| || |||||||||||||| || | || | | || | || |
Sbjct 373996 CTGCACACCGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGC--GCCAGCAAGG 374053
Query 26069 AAGAGA-CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127
||| || |||| || ||||||| || ||||| || ||| | |||||
Sbjct 374054 AAGTGATCCGT-GAC---ATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACC 374109
Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187
| ||||||||| || || |||| || |||||||||
Sbjct 374110 GAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAG 374169
Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTAA 26246
| || ||||| | |||||| | || || || | ||||| ||| ||| ||
Sbjct 374170 TTCGTCGCCGATCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCC-AA 374228
Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306
||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| |
Sbjct 374229 CCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCG 374288
Query 26307 GGTCGGCGACTATCA 26321
|||| |||||| ||
Sbjct 374289 CGTCGCCGACTACCA 374303
>seq4
Length=2906552
Score = 250 bits (276), Expect = 5e-61
Identities = 847/1280 (66%), Gaps = 57/1280 (4%)
Strand=Plus/Minus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478
||||| || ||||||||||||||||||||| |||||| || || | |||||||||||
Sbjct 974200 AGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAG-CTGACGAGCCTCGGGAGA 974142
Query 221479 AGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536
|||||||| ||||| || ||||| ||||||| || ||||| || || | |||
Sbjct 974141 CTCAAAGGGCATGCGCAGGGCAAG-GAAAG-CGTCGGCAAGACCCTGGACACCAACACCA 974084
Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594
||||| | ||| | | ||||| | |||| | || |||| || || || ||||| |
Sbjct 974083 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAGTGATTGACAT 974026
Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653
| || | ||||||||||| | ||| |||||||| ||| | |||| || |
Sbjct 974025 CAATGATCTTGTTGAGGTTGCG------GAC---AACCACCTTGGTGA-CTTCATGAAGC 973976
Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711
|| || || | || ||| |||| | || ||| |||| ||||| |
Sbjct 973975 TTCTTAAAGTCA--TAGCAGCCTTCGTTGTAA---TCGACATAAGCAGGGAGGGCCAAAG 973921
Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAG 221770
||||| ||| || || || ||||| || | | | |||| || ||||| || |||
Sbjct 973920 AGGCCAAGTTGCAAACAGCAACCTCATC-TGGAGCACAGTACTCGATAATCTCGGTGCAG 973862
Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830
|||||| || |||||| ||||||| || || || |||||| ||| || |||
Sbjct 973861 AGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCC 973802
Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890
||||||||||| ||||| |||||||| ||| || |||| || | ||| ||
Sbjct 973801 TTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCTTCCAGGATGGAATACCACAGC 973742
Query 221891 TCTCTGG-CGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGGTATA 221946
| ||||| ||| | ||| | ||| | ||||| ||| |||||| | || |
Sbjct 973741 T-TCTGGGCGCGGATGGTCGTGC-GACCACGTCCCTC---CTTCTCATACTTCTCATACA 973687
Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006
||| | | || | || || || || | ||||| || || | ||| |||||
Sbjct 973686 AAGCCT--CGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACAT 973629
Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066
||| |||||| | ||| | || || | || ||||||||| || || ||||| || ||
Sbjct 973628 CAGCGTCCAGTCCAAGTTCTTTTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 973569
Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126
| || | || | || || ||| ||| ||||| ||| || | ||||| | ||
Sbjct 973568 AAGGAACAAGTCACGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAA 973509
Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186
|||||| | ||| |||||||| ||||| || |||| ||| | || || || ||||||||
Sbjct 973508 CTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTT 973449
Query 222187 GCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244
||||||||||| | ||| ||| ||| | |||||| | ||||| | || | |
Sbjct 973448 ACCACCCTGATCGA-CAT-ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATA 973391
Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302
||||| || |||||||||||| |||||| | ||| ||| | || | | |||
Sbjct 973390 CCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGCGGTGG 973334
Query 222303 -CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361
| || ||| |||||||| || || || |||||||| || |||| ||||||||
Sbjct 973333 ACGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCG 973274
Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421
||| ||||| || || ||||| | || | || || || || |||| ||| |
Sbjct 973273 TAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCC 973214
Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481
| | || || ||||| ||||| ||||| ||| || || ||| | || |||||
Sbjct 973213 TGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATG 973154
Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540
|| | ||| ||||| | ||| | | |||| || ||| || | | | | ||
Sbjct 973153 AGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATGCCAACAGACAC-TCG 973095
Query 222541 CATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598
||| ||||| ||| |||| ||| ||| || | |||| ||| ||||| ||
Sbjct 973094 CATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGA--AGGTATGAC 973037
Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658
||||| ||||||||| || ||||| | | || ||||||| ||| || | |||
Sbjct 973036 CGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATAGCG 972977
Query 222659 GCGTCCAGCTCCGACTTGTG 222678
| ||| |||||| ||||||
Sbjct 972976 GAGTCGAGCTCCTCCTTGTG 972957
Score = 96.9 bits (106), Expect = 6e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || |||||||| || || | || || | | |||||| | ||| |||||| | ||
Sbjct 974495 GTTGACAACTTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 974436
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || ||||||||||||||| ||||| | ||| ||||| || ||||| || || |
Sbjct 974435 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAG 974376
Query 221236 CAGCAGACTGTTGCGC 221251
|||| |||||||||
Sbjct 974375 GAGCAAGCTGTTGCGC 974360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844068534720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |