Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq8 250 5e-61 seq4 250 5e-61 >seq8 Length=2103943 Score = 250 bits (276), Expect = 5e-61 Identities = 572/855 (67%), Gaps = 20/855 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 373459 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAGATTGATCTG 373518 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 373519 TCCAAGGATCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 373577 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| |||||||| ||||||||||| || || |||||||| ||| |||| | Sbjct 373578 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 373637 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 || | | || || ||| | ||||| || |||||||| |||||||| || Sbjct 373638 CTTTAGTGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 373697 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771 || || | ||||| ||| || || ||| | ||| || ||||| | || | Sbjct 373698 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGAT-ACCTACATCAAGGAGAACA 373756 Query 25772 CCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | || | || | || || ||||| ||| ||| || |||| | |||||| Sbjct 373757 GCCAGCGCAGCTAC-CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGCC 373815 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 |||||||| ||||||||| | | ||| | || | |||| | |||| ||||| ||| Sbjct 373816 GACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCC 373875 Query 25891 TTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 ||||| || || ||||| ||||| ||||||||| | ||||| ||||||||||||||||| Sbjct 373876 TTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAG 373935 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || |||||| || ||| ||||||||||||||||||| | ||||||||| Sbjct 373936 AAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGT 373995 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--TC 26068 || |||| || |||||||||||||| || | || | | || | || | Sbjct 373996 CTGCACACCGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGC--GCCAGCAAGG 374053 Query 26069 AAGAGA-CCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNN 26127 ||| || |||| || ||||||| || ||||| || ||| | ||||| Sbjct 374054 AAGTGATCCGT-GAC---ATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACC 374109 Query 26128 NNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAG 26187 | ||||||||| || || |||| || ||||||||| Sbjct 374110 GAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAG 374169 Query 26188 TATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTAC-AGTACGCCTAA 26246 | || ||||| | |||||| | || || || | ||||| ||| ||| || Sbjct 374170 TTCGTCGCCGATCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTACAAGTCTGCC-AA 374228 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| | Sbjct 374229 CCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCG 374288 Query 26307 GGTCGGCGACTATCA 26321 |||| |||||| || Sbjct 374289 CGTCGCCGACTACCA 374303 >seq4 Length=2906552 Score = 250 bits (276), Expect = 5e-61 Identities = 847/1280 (66%), Gaps = 57/1280 (4%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| || ||||||||||||||||||||| |||||| || || | ||||||||||| Sbjct 974200 AGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAG-CTGACGAGCCTCGGGAGA 974142 Query 221479 AGTGAAGGGCATACGCAG--CATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 |||||||| ||||| || ||||| ||||||| || ||||| || || | ||| Sbjct 974141 CTCAAAGGGCATGCGCAGGGCAAG-GAAAG-CGTCGGCAAGACCCTGGACACCAACACCA 974084 Query 221537 ATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGT 221594 ||||| | ||| | | ||||| | |||| | || |||| || || || ||||| | Sbjct 974083 ATGGGTCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAGTGATTGACAT 974026 Query 221595 CGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC-TGGTGA 221653 | || | ||||||||||| | ||| |||||||| ||| | |||| || | Sbjct 974025 CAATGATCTTGTTGAGGTTGCG------GAC---AACCACCTTGGTGA-CTTCATGAAGC 973976 Query 221654 TTG--AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 || || || | || ||| |||| | || ||| |||| ||||| | Sbjct 973975 TTCTTAAAGTCA--TAGCAGCCTTCGTTGTAA---TCGACATAAGCAGGGAGGGCCAAAG 973921 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAG 221770 ||||| ||| || || || ||||| || | | | |||| || ||||| || ||| Sbjct 973920 AGGCCAAGTTGCAAACAGCAACCTCATC-TGGAGCACAGTACTCGATAATCTCGGTGCAG 973862 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 |||||| || |||||| ||||||| || || || |||||| ||| || ||| Sbjct 973861 AGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCC 973802 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| ||||| |||||||| ||| || |||| || | ||| || Sbjct 973801 TTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCTTCCAGGATGGAATACCACAGC 973742 Query 221891 TCTCTGG-CGCTCACCGTCCTCTTGACTGCA-CCCTCGGTCTTTTCATAC--CCGGTATA 221946 | ||||| ||| | ||| | ||| | ||||| ||| |||||| | || | Sbjct 973741 T-TCTGGGCGCGGATGGTCGTGC-GACCACGTCCCTC---CTTCTCATACTTCTCATACA 973687 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 ||| | | || | || || || || | ||||| || || | ||| ||||| Sbjct 973686 AAGCCT--CGAATTCCTCGCCATAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACAT 973629 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||| |||||| | ||| | || || | || ||||||||| || || ||||| || || Sbjct 973628 CAGCGTCCAGTCCAAGTTCTTTTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 973569 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || | || | || || ||| ||| ||||| ||| || | ||||| | || Sbjct 973568 AAGGAACAAGTCACGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAA 973509 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 |||||| | ||| |||||||| ||||| || |||| ||| | || || || |||||||| Sbjct 973508 CTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTT 973449 Query 222187 GCCACCCTGATCCACCATCCTCT-CCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 ||||||||||| | ||| ||| ||| | |||||| | ||||| | || | | Sbjct 973448 ACCACCCTGATCGA-CAT-ATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATA 973391 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG 222302 ||||| || |||||||||||| |||||| | ||| ||| | || | | ||| Sbjct 973390 CCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGCGGTGG 973334 Query 222303 -CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | || ||| |||||||| || || || |||||||| || |||| |||||||| Sbjct 973333 ACGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCG 973274 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT 222421 ||| ||||| || || ||||| | || | || || || || |||| ||| | Sbjct 973273 TAGATACCCTCAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCC 973214 Query 222422 TTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATC 222481 | | || || ||||| ||||| ||||| ||| || || ||| | || ||||| Sbjct 973213 TGCGGGGTACCTGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATG 973154 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540 || | ||| ||||| | ||| | | |||| || ||| || | | | | || Sbjct 973153 AGGTTGTATGTCTCCAGGACACGCTCAATGTCATCTCCCCAGATGCCAACAGACAC-TCG 973095 Query 222541 CATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598 ||| ||||| ||| |||| ||| ||| || | |||| ||| ||||| || Sbjct 973094 CATAATCATGTGCTGTGGCCGCTCAACAATCTTGCCATCAAGCTTCAGA--AGGTATGAC 973037 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 ||||| ||||||||| || ||||| | | || ||||||| ||| || | ||| Sbjct 973036 CGTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATAGCG 972977 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 972976 GAGTCGAGCTCCTCCTTGTG 972957 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || |||||||| || || | || || | | |||||| | ||| |||||| | || Sbjct 974495 GTTGACAACTTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 974436 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||| ||||| | ||| ||||| || ||||| || || | Sbjct 974435 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAG 974376 Query 221236 CAGCAGACTGTTGCGC 221251 |||| ||||||||| Sbjct 974375 GAGCAAGCTGTTGCGC 974360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844068534720