Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 143 8e-29 seq3 140 1e-27 seq15 89.7 2e-12 seq25 87.8 5e-12 >seq8 Length=2103943 Score = 143 bits (158), Expect = 8e-29 Identities = 248/355 (70%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || ||||| || || | Sbjct 373661 CCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 373720 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423 | || || || ||||| |||||||| || | | |||| ||| | | || |||||| Sbjct 373721 ACTCCCTGCTCATCGATACCTACATCAAGGAGAACAGCCAGC-GCAGCTACCTCTTCAAC 373779 Query 133424 GCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 |||||| | || ||||||| ||| ||||| | |||||||| || || |||||||| Sbjct 373780 GCCATT-GAGACCATTCCTTGCATTCGCAAGAAGGCCGACTGGGCCATCAAGTGGATCCA 373838 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||||||| | ||||| || || ||||| ||||| | || ||||| || || Sbjct 373839 GGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTTGAGGGTATCTT 373898 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || ||||| || ||||| ||| | | ||||| || Sbjct 373899 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCT 373958 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || || || | ||||||| || |||||||| |||||| Sbjct 373959 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTTGCC 374013 >seq3 Length=3158035 Score = 140 bits (154), Expect = 1e-27 Identities = 194/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | |||| ||||| | ||||||||||||||| || ||| || || || Sbjct 2051571 TCTTCCAGAGCTTTGACCAAACGTCTCTGAATATAACCAGTCTCAGCTGTCTTGACGGCA 2051630 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| || |||||||| | || ||| || Sbjct 2051631 GTATCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCGGAGGGTGTCAGA 2051690 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | || |||||||||| ||||| |||||||| || | || |||||| Sbjct 2051691 CCACGGAGGTAAGAATTCTCAACGAAGCCACGAGCCTCGGGTGAGTAATCATCCTTGGTG 2051750 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || || || | || | ||||| |||| ||||||||||| ||||| ||||| Sbjct 2051751 AAATGCGGGAGAGTTCGGTATTTGAAGCCGAATGGAATACGCTTTCCTTCAACAATCTGC 2051810 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| | || ||||||| ||||| || Sbjct 2051811 TGTCCGACAAGCGCCGTCATCTGAGAAATGTT 2051842 >seq15 Length=939793 Score = 89.7 bits (98), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| |||| || || | | ||||| ||||||||||||||| || || | ||| |||| Sbjct 659071 GAAGCTGAGAAGCGCCATAGGCAATCAAACAATCACGCTCCATCTCTCCCAGACGTAGAC 659012 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 ||||||| || | | ||| || | ||| || ||||| | | | ||||||| || Sbjct 659011 CACCATCTCGTGATCGACCTTCAGTAGGTTGTCGAGTCAAGATGGCTCTAGGACCACGGG 658952 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 || || |||||| | ||||| ||||| |||||||||||| | ||| ||| Sbjct 658951 CACGCGAGTGCATCTTATCCTGCACCATGTGCTTCAGACGCTGGTAGTAGATGGGGCCGT 658892 Query 251654 TGAAGATGCTCGAAGGCATTTGCTCTCCAGT 251684 |||| ||| || | | |||||||||| Sbjct 658891 TGAAAATGTACGCCTCAAGTGGCTCTCCAGT 658861 >seq25 Length=135202 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| |||||||| ||||| || || || |||||||||||||| || | | Sbjct 3919 TGAGCGATTGTCATACGGGATGGAATGGCGTGAGGGTTGATGATGATGTCTGGAGTGACA 3978 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || ||||||||||| |||| || || ||| | |||||||| |||||||| Sbjct 3979 CCTTCTCTCGTGAAGGGCATGTCCTCTT-GTCGGTAAGTAACACCAATAGTGCCCTTTTG 4037 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||| || ||||| Sbjct 4038 ACCGTGACGAGAGGCGAACTTGTCTCCAAT 4067 Score = 84.2 bits (92), Expect = 6e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| |||||||| ||||| || ||||||||||| | Sbjct 3565 GCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAATCGGAGACCACCATCTCTG 3624 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570 || | |||||| |||| || | ||| Sbjct 3625 GCACGACCCTCCACAGGTTGTCTAGT 3650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816411967231