Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 132 6e-25 seq4 113 6e-19 seq6 102 1e-15 >seq8 Length=2103943 Score = 132 bits (146), Expect = 6e-25 Identities = 224/322 (70%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | |||||| |||||| |||||||||||||| |||| || || Sbjct 374309 GCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATG 374250 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| ||| ||||| | | Sbjct 374249 TTCTCCATGAAGTCGAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTGCCGAGAGCGACA 374190 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| || |||||||| ||||| |||||||| ||| ||| || ||||||||| | | Sbjct 374189 AGCAGACGATCGGCGACGAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGG 374130 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| ||||||| ||| || ||| || ||| |||| Sbjct 374129 AGGGCGCAAGGGAGAGCCTCGGTCAAGAACTCTTGCTCAATTCGGACAGCATCGGTGATG 374070 Query 868931 ATCTGCCTGGGCACGTC---GGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || | | | ||| || | | | | || |||| | | | || ||||||||| Sbjct 374069 ATGTCACGGATCACTTCCTTGCTGGCGCGGTTCTTGAGGTG---AGAGTGCAGCAGGCAG 374013 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||| ||||| ||||| Sbjct 374012 GCAAAGTCGGTGTGCAGACCCT 373991 Score = 129 bits (142), Expect = 7e-24 Identities = 228/321 (71%), Gaps = 21/321 (7%) Strand=Plus/Minus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || | ||| ||| ||||| ||| ||| | |||||| | Sbjct 374020 GCAGGCA-GGCAAAGTCGG---TGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAA 373965 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGC-C 869268 |||| || || |||||||| || |||||||||||||| ||||||| | | || || | Sbjct 373964 AAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAG--GCAAAGGCAC 373907 Query 869269 CG-AGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGA 869327 || ||| ||||| ||||| |||||||||||| | | || |||| ||||||| | || Sbjct 373906 CGCTGAAGAAGATACCCTCAACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAG--GAAGA 373849 Query 869328 GGCCCTCCTTG---TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCA 869384 | | |||| | ||||||||| || |||||||||||||| || | | | || | Sbjct 373848 G----TTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAA 373793 Query 869385 CCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCG-GGTCCTTGACATAGGTGTC 869442 || || |||||| ||||||| | | | | ||| | ||||||| ||||| || Sbjct 373792 TGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCT--GGCTGTTCTCCTTGATGTAGGTATC 373735 Query 869443 GATCAGGAGCGAATAGGTCTC 869463 ||| || || || |||||||| Sbjct 373734 GATGAGCAGGGAGTAGGTCTC 373714 >seq4 Length=2906552 Score = 113 bits (124), Expect = 6e-19 Identities = 215/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| || | || |||| ||| || || || |||||||| | | ||||| || Sbjct 973442 CTGATCGACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGA 973383 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||||| ||| || | ||| || ||||| Sbjct 973382 GGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGGTGGACGTTCAAGCC 973323 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 || || || ||| |||||| || | || || ||| || || ||||||||||| |||| Sbjct 973322 AATACCACCAGCCATCTTGGAAATCATGGCACA-TGTCTTCAGAGTGTCGTAGATACCCT 973264 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || ||| |||||||||| || | ||||| || || || | |||| || | Sbjct 973263 CAATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCCTGCGGGGTAC 973204 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | |||||||| || ||||| | || |||||| |||| | |||||| || ||| | Sbjct 973203 CTGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTATG 973144 Query 1630364 TGGCGAGCACGCGC 1630377 | | || || ||| Sbjct 973143 TCTCCAGGACACGC 973130 Score = 113 bits (124), Expect = 6e-19 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239 |||| ||| | |||| ||| ||||| ||||| || | ||| |||| || ||| ||||| Sbjct 1115191 ATCCAGGCCTCAAACTTCCTTGACATTAAGCCACTCTTGGATGTTGGCTGTAAGACTGTG 1115132 Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 || |||||||||||||||||||| ||||| ||||| |||||||| || ||||||| Sbjct 1115131 GCAAACATGATCAAGGGCAAGTCCCCCGAAGAGATTCGCAAGACATTCAACATCA 1115077 >seq6 Length=2428900 Score = 102 bits (112), Expect = 1e-15 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| | | ||||| || |||||||| || || Sbjct 2339400 CCGCGCCCCTCCCACGCCGACTGGACTTACCTTGAGAAGTATGGTATCAAGGCCTCCTCT 2339341 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 ||||| ||||| |||||||||||| | ||||||||||||||||| || ||| Sbjct 2339340 GGCGGCGGCCGAAGCAGCGCCCGCGAGACCATTGCCCGCGTCGCCGCCGGCGCTGTTGCC 2339281 Query 18478 GAGAAATGGCT 18488 ||||| ||||| Sbjct 2339280 GAGAAGTGGCT 2339270 Score = 86.0 bits (94), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 |||||||||||||| |||||||||||| | ||||| ||||||||||| || |||| Sbjct 2338977 GGCCTCGGCGAGCCATGCTTTGACAAGCTTGAGGCTCTTCTCGCCCACGCTATCATGTCT 2338918 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| || ||||||||| Sbjct 2338917 ATTCCTGCTACTAAGGGCTTTGAGATTGGC 2338888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134029924971