Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 134 1e-26 seq2 107 2e-18 seq3 95.1 1e-14 >seq7 Length=2414983 Score = 134 bits (148), Expect = 1e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || || | | | |||||||| ||||||| Sbjct 116131 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCA-TCCTCGAGTTGCTTGC 116073 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| || ||||||||||| ||||| ||||| |||||||| |||||| || Sbjct 116072 CAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACT 116013 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || |||| | |||||| |||| ||||| ||| |||||||| || | Sbjct 116012 TCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGG 115953 Query 133642 TTTTTACGAAAATCTGCATGG 133662 | || ||||| || ||||||| Sbjct 115952 TCTTGACGAAGATTTGCATGG 115932 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | || | | | ||||| |||||||| | Sbjct 819877 GGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCCAGCTGCTTAC 819819 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||||||||| || || ||||| |||||||| |||||| || Sbjct 819818 CAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 819759 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 819758 TGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 819699 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 819698 TCTTGACGAAAATCTGCAT 819680 >seq2 Length=3541710 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || | || | ||||||||||| || || ||||| |||||| Sbjct 89079 TCCTCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 89020 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||||| || ||| || || | ||||| | Sbjct 89019 TCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATG 88960 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 88959 GTCTTGCCCGTCAGGGTCTTCACGAAA 88933 >seq3 Length=3158035 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| |||| || ||| ||| ||| || |||||||| || ||| | || Sbjct 1903400 TTCTGGATGTTGTAGTCGCTCAAGGTGTGACC-GTCTTCCAGCTGCTTACCAGCGAAGAT 1903458 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | ||||||||||| || || ||||| || ||||| ||||| ||||| | || Sbjct 1903459 TAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTTGTC 1903518 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | ||||||| | ||||| | | ||| | || |||||||| ||||| || ||||| Sbjct 1903519 GATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGAGTCTTGACGAA 1903578 Query 133652 AATCTGCAT 133660 |||||| || Sbjct 1903579 AATCTGTAT 1903587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420419306120