Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8 239 6e-57 seq4 111 2e-18 >seq8 Length=2103943 Score = 239 bits (264), Expect = 6e-57 Identities = 390/546 (71%), Gaps = 23/546 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||||||||| || ||||||||||| ||| | || | Sbjct 373458 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAAGAGATTGATC 373516 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | || | | ||||| ||| ||| ||| |||||| | |||||| Sbjct 373517 TGTCCAAGGATCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 373576 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||||| ||| |||||| |||||||| || ||||||||||| || Sbjct 373577 CTCACATCCTGGCCTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAG 373635 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||||| |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 373636 CGCTTTAGTGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATG 373695 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAG--GACC 1456069 || || ||||||||||| || |||||||| || || ||||| |||||| ||||| || | Sbjct 373696 ATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGATACCTACATCAAGGAGAAC 373755 Query 1456070 CGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | | || | ||||||| |||||| || || | || | | | || |||| Sbjct 373756 AGCCAGCGCAG--CTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGG 373813 Query 1456130 CCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 |||||||||| || ||||||||| ||||| | ||| | ||||||| |||| || Sbjct 373814 CCGACTGGGCCATCAAGTGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGCGCCT 373868 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243 || | |||||||| ||| ||||| ||||| ||| ||| || || | | ||||||| Sbjct 373869 GGTTGCCTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTC 373926 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303 |||||||||||||| || |||||||| |||| | |||| |||||| | ||| ||| Sbjct 373927 TGGCTCAAGAAGCGAGGTCTCATGCCTGGTC-TGACCTTTTCCAACGAGCTCATCTCTCG 373985 Query 1456304 CGACGA 1456309 ||||| Sbjct 373986 TGACGA 373991 Score = 113 bits (124), Expect = 6e-19 Identities = 180/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| || ||| || ||| ||||||| | | |||| | || || || Sbjct 374068 ATCATCACCGATGCTGTCCGAATTGAGCAAGAGTTCTTGACCGAGGCTCTCCCTTGCGCC 374127 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| | ||||||||| ||| | || ||| ||||||||||| || |||||||| || | Sbjct 374128 CTCCTTGGCATGAACTCCAAC-CTGATGAAGCAGTACATTGAGTTC-GTCGCCGATCGTC 374185 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || |||||| || ||||| |||| | | |||||||| ||| | ||| Sbjct 374186 TGCTTGTCGCTCTCGGCAACG-AGAAGATCTACAAGTCTGCCAACCCCTTCGACTTCATG 374244 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| || || |||| |||||||||||||| |||||| ||||| | ||| ||| Sbjct 374245 GAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTCGCCGACTACCAG 374304 Query 1456762 AAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 374305 AAGGCTGGTGTCA 374317 >seq4 Length=2906552 Score = 111 bits (122), Expect = 2e-18 Identities = 200/290 (69%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||||| ||| |||||| || | ||||| || || || || || || |||| Sbjct 973154 CATGTC-CAGCAAGTTCTTCACCCATGCCTCCCCCACCCTGTTCAACGCAGGTACCCCGC 973212 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 | ||| || || ||||| || | |||||||||| |||| || ||||| |||| Sbjct 973213 AGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGATAGCATTGAGGGTATCT 973272 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| || ||| || || | || |||||| ||| || || || || || || Sbjct 973273 ACGACACTCTGAAGACATGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTGAACG 973332 Query 260073 CACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 ||| | || ||| | ||| | ||| | || ||||||||||| || ||||| Sbjct 973333 TCCACCGCATCCGTGCCACCGGCTCTTACATTGCTGGCACCAACGGTACCTCTAACGGTA 973392 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || | ||||||||||| || || ||| |||| || | || ||||| ||| Sbjct 973393 TTATTCCCATGCTTCGAGTGTTCAACAACACTGCCAGATATGTCGATCAG 973442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177805123534206