Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7 129 2e-24 seq15 127 6e-24 seq3 96.9 1e-14 >seq7 Length=2414983 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 116164 CATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 116105 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 116104 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 116045 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || ||||| || || | ||| || | || Sbjct 116044 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTC 115985 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || || ||||| Sbjct 115984 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 115934 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || |||||||| || || || || || || || Sbjct 819907 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 819848 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | ||||| ||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 819847 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 819788 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || ||||| || || | || || | || || Sbjct 819787 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 819728 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 819727 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 819680 >seq15 Length=939793 Score = 127 bits (140), Expect = 6e-24 Identities = 222/322 (69%), Gaps = 1/322 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || ||||| || ||||| || || || ||||||| || || || || || Sbjct 711613 GCCGTCATCACTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCC 711672 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| ||||| || || Sbjct 711673 GGTCTCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATC 711732 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 711733 GCCTACGGCCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGT 711792 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || |||| ||||| || || || || || | Sbjct 711793 GGTGGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 711852 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||| ||||| || || | ||||| |||||||| || || || || || || ||| Sbjct 711853 ACTGCCGGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGCCTTGTCAACCACTTT 711912 Query 349910 GTTAAAGAATTTAAGCGTCAAG 349931 ||||| ||||||||||| |||| Sbjct 711913 GTTAACGAATTTAAGCG-CAAG 711933 >seq3 Length=3158035 Score = 96.9 bits (106), Expect = 1e-14 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290 |||||||||||| | | || || || ||||||||||| | ||| |||||||| |||| Sbjct 2051600 AATATAACCAGTCTCAGCTGTCTTGACGGCAGTATCAATGAGACCTTCACGACCAGCCAT 2051659 Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350 || |||||||| ||||| | || || || |||| | | ||| |||||| || || Sbjct 2051660 GGCGTGGAAGAAGAATTCGGAGGGTGTCAGACCACGGAGGTAAGAATTCTCAACGAAGCC 2051719 Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCC 378410 | || | || || | ||||| || || |||| || | || || | | || || Sbjct 2051720 ACGAGCCTCGGGTGAGTAATCATCCTTGGTGAAATGCGGGAGAGTTCGGTATTTGAAGCC 2051779 Query 378411 ATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446 ||||||| || ||||| |||||| |||| || || Sbjct 2051780 GAATGGAATACGCTTTCCTTCAACAATCTGCTGTCC 2051815 Score = 91.5 bits (100), Expect = 4e-13 Identities = 118/159 (74%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 377432 CAGATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATG 377491 ||||| ||| ||| || ||| | | || |||||||| |||| || ||| || || | Sbjct 2050787 CAGAT--TGAGAAT-TTCCTTGAGT-CGGGGCACACCGAGTGTGACGTTC---TTGGAAG 2050839 Query 377492 CAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACT 377551 ||||| ||||||||||| || || || || | || || | |||||||||||| |||| Sbjct 2050840 ACACACCGGCAAAGTGGAACGTGTTCAGCGTCATCTGCGTGGCGGGCTCACCAATGGACT 2050899 Query 377552 GCGCTGCAATAACGCCAACCATTTCTCCAGGATTGACaa 377590 | || |||| || ||||||||||| || || || |||| Sbjct 2050900 GGGCAGCAAGGACACCAACCATTTCACCGGGGTTAACAA 2050938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253176905589