Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03-
07] 63 sequences; 38,329,450 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq7 129 2e-24
seq15 127 6e-24
seq3 96.9 1e-14
>seq7
Length=2414983
Score = 129 bits (142), Expect = 2e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 116164 CATACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 116105
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| || ||||| || ||||| || || ||||| ||||| |||||
Sbjct 116104 GGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGG 116045
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || | || ||||| || || | ||| || | ||
Sbjct 116044 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTC 115985
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || || || || |||||
Sbjct 115984 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 115934
Score = 114 bits (126), Expect = 4e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || || || |||||||| || || || || || || ||
Sbjct 819907 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 819848
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| ||||| ||||| || || || || ||||| ||||| | || ||||| || || ||
Sbjct 819847 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 819788
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || || ||||| || || | || ||||| || || | || || | || ||
Sbjct 819787 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 819728
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || |||||||||||
Sbjct 819727 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 819680
>seq15
Length=939793
Score = 127 bits (140), Expect = 6e-24
Identities = 222/322 (69%), Gaps = 1/322 (0%)
Strand=Plus/Plus
Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669
|| || || ||||| || ||||| || || || ||||||| || || || || ||
Sbjct 711613 GCCGTCATCACTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCTACCAAGGACGCC 711672
Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729
|| |||||| || | || || || | || || || || ||||| ||||| || ||
Sbjct 711673 GGTCTCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCTGCTGCCATC 711732
Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789
|| || || ||||| || | | || || || | || || || ||| | |||
Sbjct 711733 GCCTACGGCCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGT 711792
Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849
|||||||| || ||||| || || || || |||| ||||| || || || || || |
Sbjct 711793 GGTGGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCC 711852
Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909
||||| ||||| || || | ||||| |||||||| || || || || || || |||
Sbjct 711853 ACTGCCGGTGACACTCACTTGGGTGGTGAAGATTTCGACAACCGCCTTGTCAACCACTTT 711912
Query 349910 GTTAAAGAATTTAAGCGTCAAG 349931
||||| ||||||||||| ||||
Sbjct 711913 GTTAACGAATTTAAGCG-CAAG 711933
>seq3
Length=3158035
Score = 96.9 bits (106), Expect = 1e-14
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 378231 AATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCAT 378290
|||||||||||| | | || || || ||||||||||| | ||| |||||||| ||||
Sbjct 2051600 AATATAACCAGTCTCAGCTGTCTTGACGGCAGTATCAATGAGACCTTCACGACCAGCCAT 2051659
Query 378291 TGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCC 378350
|| |||||||| ||||| | || || || |||| | | ||| |||||| || ||
Sbjct 2051660 GGCGTGGAAGAAGAATTCGGAGGGTGTCAGACCACGGAGGTAAGAATTCTCAACGAAGCC 2051719
Query 378351 TCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCC 378410
| || | || || | ||||| || || |||| || | || || | | || ||
Sbjct 2051720 ACGAGCCTCGGGTGAGTAATCATCCTTGGTGAAATGCGGGAGAGTTCGGTATTTGAAGCC 2051779
Query 378411 ATATGGAATTCGTTTTCCATCAACATTCTGTTGACC 378446
||||||| || ||||| |||||| |||| || ||
Sbjct 2051780 GAATGGAATACGCTTTCCTTCAACAATCTGCTGTCC 2051815
Score = 91.5 bits (100), Expect = 4e-13
Identities = 118/159 (74%), Gaps = 7/159 (4%)
Strand=Plus/Plus
Query 377432 CAGATAATGATAATATTTCTTCAATGCGTGGCACACCACGTGTAACATTCGATTTAGATG 377491
||||| ||| ||| || ||| | | || |||||||| |||| || ||| || || |
Sbjct 2050787 CAGAT--TGAGAAT-TTCCTTGAGT-CGGGGCACACCGAGTGTGACGTTC---TTGGAAG 2050839
Query 377492 CAACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACT 377551
||||| ||||||||||| || || || || | || || | |||||||||||| ||||
Sbjct 2050840 ACACACCGGCAAAGTGGAACGTGTTCAGCGTCATCTGCGTGGCGGGCTCACCAATGGACT 2050899
Query 377552 GCGCTGCAATAACGCCAACCATTTCTCCAGGATTGACaa 377590
| || |||| || ||||||||||| || || || ||||
Sbjct 2050900 GGGCAGCAAGGACACCAACCATTTCACCGGGGTTAACAA 2050938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253176905589
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |