Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03-
07] 63 sequences; 38,329,450 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4 224 1e-53
seq2 96.9 4e-15
>seq4
Length=2906552
Score = 224 bits (248), Expect = 1e-53
Identities = 367/527 (70%), Gaps = 4/527 (1%)
Strand=Plus/Plus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
|||||||| ||||| ||| || | ||| | |||| ||| || || ||| | || ||
Sbjct 973130 GCGTGTCCTGGAGACATACAACCTCATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCAC 973189
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
|||||||||||| ||||| || | ||| |||| |||||| |||| | |||||
Sbjct 973190 CCTGTTCAACGCAGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAA 973249
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
||| || || || || |||||||| || || ||| |||||| || ||||||
Sbjct 973250 GGACGATAGCATTGAGGGTATCTACGACACTCTGAAGACATGTGCCATGATTTCCAAGAT 973309
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470
| | |||||||| || | || || | || ||||||| | |||| | ||
Sbjct 973310 GGCTGGTGGTATTGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACATTGCT 973367
Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530
|| || ||||| | | | || || | || ||||| || || ||||||||||| |||
Sbjct 973368 GGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCC 973427
Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
| || ||| | ||||||||| ||||| || | || |||||||||||||||||
Sbjct 973428 AGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCC 973487
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
|||||||||||| | | ||||| || || || || ||| || || | |||||| |
Sbjct 973488 TGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTC 973547
Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710
||| ||||||| |||| ||||| |||||||| || ||||||||| | || ||
Sbjct 973548 CGCGCCCGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAA 973607
Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757
||| || ||| ||| ||||||||||| ||||| ||||| |||||
Sbjct 973608 AAGAACTTGGACTGGACGCTGATGTGCCCCAACGAATGCCCTGGCCT 973654
Score = 127 bits (140), Expect = 2e-24
Identities = 304/451 (67%), Gaps = 19/451 (4%)
Strand=Plus/Plus
Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543
|||||| | ||||| | || || |||||||| || ||| | ||||| ||||||||
Sbjct 974361 CGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAAC 974420
Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603
|||||| |||||||| ||||| |||||||||||| ||| || ||| || || |||
Sbjct 974421 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 974480
Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663
|| | ||||| || ||||||||||| | | | | ||| |||
Sbjct 974481 TTCCAAGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGT--CCG 974538
Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716
| || |||| || || |||| |||||| ||| | ||||| || |
Sbjct 974539 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATCCCCAACA 974595
Query 55717 TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775
||| | | | |||||| ||||| ||| || ||||||||| | ||| | | |
Sbjct 974596 TCCCCGAAGATATCAAGGCCCTTTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 974652
Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832
||| | ||| |||||||||||||| | ||| || ||||||||||| |||||||||
Sbjct 974653 TTGTCCAGATGGCAGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAACATCC 974712
Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892
|||| || |||| || ||| |||| | | | |||||||| || |||||| |
Sbjct 974713 ACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 974772
Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923
| |||||||| || |||||||| ||||| ||
Sbjct 974773 GTCTCAAGACCGGCATGTACTACCTGCGTAC 974803
>seq2
Length=3541710
Score = 96.9 bits (106), Expect = 4e-15
Identities = 185/273 (68%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081
||| || |||||| | || || | ||||| ||||| |||||| || || || | ||
Sbjct 980933 CAAGCGGGTGAAGGTATAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGAGAACC 980874
Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141
||| | || ||||| | | |||| |||||||| ||||| |||| || ||||
Sbjct 980873 AAAGTTACCGCTAGGCTCCAAAACATTGATGTTGTTGGATCCCACAAAATCTTGGGCCAG 980814
Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201
| ||| || ||||||| |||||||||||||| || || ||| | | | ||
Sbjct 980813 TCCGATAATGGTTTGCTGCAGAGAGGCTTCACCGTGGTGGTAGGCAGTCAGTCCAGAGAC 980754
Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261
|| || |||| || | | ||||| |||| | || ||| |||||| ||| |||||
Sbjct 980753 ATAACCAGCCAGCTCCACAACCTTTTCGTCCTTGACCACGTTTCTCTTGAAACAAGCGTA 980694
Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294
| |||||| ||||| || ||||| || ||
Sbjct 980693 GAGCACCTTTCGCTGACCGGGCTTCAATCCATC 980661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215569067400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |