Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 224 1e-53 seq2 96.9 4e-15 >seq4 Length=2906552 Score = 224 bits (248), Expect = 1e-53 Identities = 367/527 (70%), Gaps = 4/527 (1%) Strand=Plus/Plus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 |||||||| ||||| ||| || | ||| | |||| ||| || || ||| | || || Sbjct 973130 GCGTGTCCTGGAGACATACAACCTCATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCAC 973189 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 |||||||||||| ||||| || | ||| |||| |||||| |||| | ||||| Sbjct 973190 CCTGTTCAACGCAGGTACCCCGCAGGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAA 973249 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| || || || || |||||||| || || ||| |||||| || |||||| Sbjct 973250 GGACGATAGCATTGAGGGTATCTACGACACTCTGAAGACATGTGCCATGATTTCCAAGAT 973309 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | | |||||||| || | || || | || ||||||| | |||| | || Sbjct 973310 GGCTGGTGGTATTGGCTTGAACG--TCCACCGCATCCGTGCCACCGGCTCTTACATTGCT 973367 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| | | | || || | || ||||| || || ||||||||||| ||| Sbjct 973368 GGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTTCGAGTGTTCAACAACACTGCC 973427 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 | || ||| | ||||||||| ||||| || | || ||||||||||||||||| Sbjct 973428 AGATATGTCGATCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCC 973487 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||||||| | | ||||| || || || || ||| || || | |||||| | Sbjct 973488 TGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTC 973547 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||||| |||| ||||| |||||||| || ||||||||| | || || Sbjct 973548 CGCGCCCGTGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAA 973607 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 ||| || ||| ||| ||||||||||| ||||| ||||| ||||| Sbjct 973608 AAGAACTTGGACTGGACGCTGATGTGCCCCAACGAATGCCCTGGCCT 973654 Score = 127 bits (140), Expect = 2e-24 Identities = 304/451 (67%), Gaps = 19/451 (4%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||| | || || |||||||| || ||| | ||||| |||||||| Sbjct 974361 CGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATTCTGGGCAAC 974420 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| |||||||||||| ||| || ||| || || ||| Sbjct 974421 AACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCCGGCGAG 974480 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| || ||||||||||| | | | | ||| ||| Sbjct 974481 TTCCAAGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTCTGGT--CCG 974538 Query 55664 CAG--ATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGAT 55716 | || |||| || || |||| |||||| ||| | ||||| || | Sbjct 974539 ATGCCATGAAGAACCGTATCATTGCTGAGAACGGC---TCCATTCAGAACATCCCCAACA 974595 Query 55717 TCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 ||| | | | |||||| ||||| ||| || ||||||||| | ||| | | | Sbjct 974596 TCCCCGAAGATATCAAGGCCCTTTACAAGACCGTCTGGGAGATTTCTCAGC---GCCAAA 974652 Query 55776 TTGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCT 55832 ||| | ||| |||||||||||||| | ||| || ||||||||||| ||||||||| Sbjct 974653 TTGTCCAGATGGCAGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAACATCC 974712 Query 55833 TCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 |||| || |||| || ||| |||| | | | |||||||| || |||||| | Sbjct 974713 ACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAGCTTG 974772 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 | |||||||| || |||||||| ||||| || Sbjct 974773 GTCTCAAGACCGGCATGTACTACCTGCGTAC 974803 >seq2 Length=3541710 Score = 96.9 bits (106), Expect = 4e-15 Identities = 185/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| || |||||| | || || | ||||| ||||| |||||| || || || | || Sbjct 980933 CAAGCGGGTGAAGGTATAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGAGAACC 980874 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 ||| | || ||||| | | |||| |||||||| ||||| |||| || |||| Sbjct 980873 AAAGTTACCGCTAGGCTCCAAAACATTGATGTTGTTGGATCCCACAAAATCTTGGGCCAG 980814 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | ||| || ||||||| |||||||||||||| || || ||| | | | || Sbjct 980813 TCCGATAATGGTTTGCTGCAGAGAGGCTTCACCGTGGTGGTAGGCAGTCAGTCCAGAGAC 980754 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || |||| || | | ||||| |||| | || ||| |||||| ||| ||||| Sbjct 980753 ATAACCAGCCAGCTCCACAACCTTTTCGTCCTTGACCACGTTTCTCTTGAAACAAGCGTA 980694 Query 152262 AATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 | |||||| ||||| || ||||| || || Sbjct 980693 GAGCACCTTTCGCTGACCGGGCTTCAATCCATC 980661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215569067400