Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 262 4e-65 seq7 203 4e-47 seq2 129 7e-25 seq3 120 3e-22 >seq4 Length=2906552 Score = 262 bits (290), Expect = 4e-65 Identities = 1158/1808 (64%), Gaps = 79/1808 (4%) Strand=Plus/Minus Query 79987 GCCGCCTGATCAACGGGTACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGA 80046 ||| |||||||||||| | | ||||| || ||| ||| | || ||||| Sbjct 974848 GCCTCCTGATCAACGG------TGAATTGAATAGGAGCAGCCGCGGCCTGAGTACGCAGG 974795 Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 ||||||||||| |||||||| || ||||||||| | |||||| | | ||| Sbjct 974794 TAGTACATGCCGGTCTTGAGACCAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTG 974735 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | |||||| | || |||| ||||||||| ||||| |||||| |||||||| ||| Sbjct 974734 CCCATTGTGGGATCCTTCATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCA 974675 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACA-- 80224 ||||| || ||||| | | |||| || | ||| ||||| || || || | Sbjct 974674 CGATCAGCTGCCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGG 974615 Query 80225 -CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTTTACAATT 80283 |||| | || || || |||| | | | | | || |||| || |||| Sbjct 974614 GCCTTGATA---TCTTCGGGGATGTTGGGGATGTTCTGAATGGAGCCGTTCTCAGCAATG 974558 Query 80284 TGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAG---G 80337 | || |||| || | ||||| || | | ||| || || | ||| | Sbjct 974557 ATACGGTTCTTCATGGCATCGGACCAGAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAG 974498 Query 80338 TGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTG 80397 | ||| || | || ||||| || || ||| || ||| | || | ||| | |||| Sbjct 974497 GGGTTGACAA-CTTGG--AACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTG 974441 Query 80398 TAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGG 80457 || ||||| || ||||||||| || || ||||| | ||| || || || ||||| ||| Sbjct 974440 TAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGG 974381 Query 80458 CCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC---GCGCAAATCTGAC 80514 ||| | || || ||| ||||||| |||||| | ||| | || | || || Sbjct 974380 GCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCAC 974321 Query 80515 ---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCG 80569 || | ||| | ||| |||| ||||||||||| || | ||||||||| | Sbjct 974320 TCCCACAGGTCAG----AGGGCT-TGACATCCCACATGTCGAATTGGAGGATGCCCTCGG 974266 Query 80570 ACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACT 80629 | || || || ||| ||| | ||||| || |||||| |||||| | ||| || Sbjct 974265 ATGCAGGTGATCCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAG 974206 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTG 80689 || ||||||||| || || ||| |||||||| |||||||| || |||| | Sbjct 974205 CCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGG 974146 Query 80690 GGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGG 80749 | || || | || || || | ||| |||| || || ||||| || || | Sbjct 974145 GAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACAC 974086 Query 80750 CGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATT- 80807 | || || ||||||||| |||| | | || ||||||| | | |||| ||| ||| Sbjct 974085 CAATGGGTCGGTGGCGCATGTTGCTGTTGC-GGGCCTCCTGGACAGGGT---AGTGATTG 974030 Query 80808 --ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGA 80865 ||| |||| ||| |||||||| ||| ||| || || |||||||| |||| | Sbjct 974029 ACATCAATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTA 973970 Query 80866 AAGTC------GAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTG 80919 ||||| | || ||| | ||| | || || ||| || || |||| ||| Sbjct 973969 AAGTCATAGCAGCCTTCGTTGTAATCGACATAAGCAGGGAGGGCCAAAGAGGCCAAGTTG 973910 Query 80920 CACACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAA 80976 || || || ||||| || |||| | || |||||| || || ||||| | || || Sbjct 973909 CAAACAGCAACCTCATCTGGAGCA-CAGT--ACTCGATAATCTCGGTGCAGAGGTTGGAG 973853 Query 80977 GACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCAC 81036 || || |||||||| |||||||| |||| |||||| || ||||||||| | Sbjct 973852 CTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGC 973793 Query 81037 ATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCC 81096 ||| | ||| |||| ||||| ||| | | ||||||| | ||| | || | || Sbjct 973792 ATGAAGGGGTTACCAGTCTCAGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGGGCG 973733 Query 81097 TTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTG 81156 || | |||| || || | ||||||| | || | ||||| | Sbjct 973732 CGGATGGTCGTGCGACCACGTCCCTCCTTCTCATACTTCTCATACAAAGCCTCGAATTCC 973673 Query 81157 GCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGT 81215 | || | | || |||| ||| | ||||| ||||| ||||||||||| |||||| Sbjct 973672 TCGCCATAGCAG-TCAGCAAGGCCAGGGCATTCGTTGGGGCACATCAGCGTCCAGTCCAA 973614 Query 81216 GTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG 81275 || || || ||| ||||||||| || || |||||||| || ||||| ||| || Sbjct 973613 GTTCTTTTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCACG 973554 Query 81276 GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGC 81335 | ||| |||| || | || ||||| ||| | || || || || | || ||| || Sbjct 973553 GGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGC 973494 Query 81336 ATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTT 81389 ||||| ||||| || || | ||| | | || | |||| | |||||||| | Sbjct 973493 GTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTA---CCACCCTGATC 973437 Query 81390 GACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACC 81449 ||| || | |||||| ||| || || || | ||| || || ||||| | || ||| Sbjct 973436 GACATATCTGGCAGTGTTGTTGAACACTCGAAGCATGGGAATAATACCGTTAGAGGTACC 973377 Query 81450 GTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGA-----AAGACCG 81504 ||| || || | || || || |||| || | ||| | | || ||| || Sbjct 973376 GTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGA---TGC-GGTGGACGTTCAAG-CCA 973322 Query 81505 ATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCG 81564 || ||||| | | ||| |||||| ||||| |||| || || || || ||||| Sbjct 973321 ATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCGTAGATACCCTCA 973262 Query 81565 ATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--C 81622 |||||||| | |||||||| | |||||| || |||| || |||| | | | | Sbjct 973261 ATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT--GGGCCTGCGGGGTAC 973204 Query 81623 CGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGG 81682 | || |||||||| || |||| || || |||| | | | ||||| |||| || | Sbjct 973203 CTGCGTTGAACAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTTGTATG 973144 Query 81683 TTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 | ||| ||| || ||| || || || || || | || || ||||||| ||||| Sbjct 973143 TCTCCAGGACACGCTCAATGTCATCTCCCCAGATGCCAACAGACACTCGCATAATCATGT 973084 Query 81743 ACTGGGGC 81750 ||| ||| Sbjct 973083 GCTGTGGC 973076 >seq7 Length=2414983 Score = 203 bits (224), Expect = 4e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 115934 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 115993 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| | || || |||||||||||||| |||||||| |||||| Sbjct 115994 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 116053 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| ||||| |||||||||||||||| || || || | ||||| || Sbjct 116054 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 116113 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || ||||| ||||| Sbjct 116114 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTTCGTGGTGG 116160 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 819680 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 819739 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 819740 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 819799 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||||||||| || ||||||| || ||||| | ||||| || Sbjct 819800 CAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACCCTCTCCGACTACAAC 819859 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| |||| || || ||||| Sbjct 819860 ATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 819906 Score = 109 bits (120), Expect = 6e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 ||||||||||||||| |||||||| ||||||||||| | || |||||||||||||| || Sbjct 116408 TCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGCTTGATCTTTGCTGGTAAGCAGCT 116467 Query 27555 CGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAG 27613 || || | ||| ||| | ||| ||||| || |||| ||||| ||| || || | | Sbjct 116468 GGAAGACGGTCGCACCTTGAGC-GACTACAACATCCAGAAGGAGAGCACACTGCACTTGG 116526 Query 27614 TCTTGCGTCTTCGCGGTGGACA 27635 | |||||||||| ||||| || Sbjct 116527 TTCTGCGTCTTCGTGGTGGCCA 116548 >seq2 Length=3541710 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 88934 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 88993 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 88994 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 89053 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || |||||||| ||||| |||||||||| || ||||| | ||||| || |||| ||| Sbjct 89054 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 89113 Query 27595 G 27595 | Sbjct 89114 G 89114 >seq3 Length=3158035 Score = 120 bits (132), Expect = 3e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || || || |||||||| || ||||||||||| ||||| ||| |||| || || Sbjct 1903587 ATACAGATTTTCGTCAAGACTCTCACCGGCAAGACAATTACCCTTAAGGTGGAATCTTCC 1903528 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || ||||||||||| ||||| ||||| || |||||| Sbjct 1903527 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAG 1903468 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| |||| || ||||||||||| || || || | || ||| | ||| ||||| || Sbjct 1903467 CAGCGCTTAATCTTCGCTGGTAAGCAGCTGGAAGACGGTCACACCTTGAGC-GACTACAA 1903409 Query 27585 TGTCCAAAAG 27594 |||| ||| Sbjct 1903408 CATCCAGAAG 1903399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309950880560