Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03- 07] 63 sequences; 38,329,450 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7 174 3e-38 seq2 152 1e-31 seq3 118 2e-21 seq8 91.5 3e-13 >seq7 Length=2414983 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | || || || |||||||||||||| | Sbjct 819907 ACCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 819848 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || |||||||| || || ||||| || Sbjct 819847 GAGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGG 819788 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 819787 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 819728 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 819727 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 819677 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 116161 ACCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 116102 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || || || || |||| ||| || |||||| || Sbjct 116101 CAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGG 116042 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| || || |||| || || Sbjct 116041 AATGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCCAC 115982 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 115981 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 115934 Score = 107 bits (118), Expect = 4e-18 Identities = 122/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 |||||||| || || || |||| || | ||||| || || |||||||||||||| | Sbjct 116545 CCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 116486 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| || || || || || || || ||||||||||| || || |||||| || Sbjct 116485 AAG-GTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 116427 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||||||||||||| | |||||| | || ||| | ||| Sbjct 116426 AATACCCTCCTTGTCCT-GATCTTGGACTTGACGTTGTCG 116388 >seq2 Length=3541710 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||| |||||||||||||| || || || || ||||||||| Sbjct 89112 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 89053 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 89052 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 88993 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | ||||| || || ||||| ||||| ||||||| ||||| ||||| Sbjct 88992 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 88934 >seq3 Length=3158035 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 282902 CGTGCTTTCTTTTTGGATGTTGTAGTC-AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCC 282960 |||||| | || |||||||||||||| |||| ||| | || || || || || || | Sbjct 1903390 CGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAG-GTGTGACCGTCTTCCAGCTGCTTAC 1903448 Query 282961 CGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTT 283020 | || ||||| || || || |||||| ||||| ||||| ||||| || ||||| | | Sbjct 1903449 CAGCGAAGATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGAATCTTGGACT 1903508 Query 283021 TTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAG 283080 | ||| | ||||| ||||| |||| ||| || | || || || ||||| || || | || Sbjct 1903509 TGACGTTGTCGATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGAG 1903568 Query 283081 TCTTAACGAATATCTGCAT 283099 |||| ||||| ||||| || Sbjct 1903569 TCTTGACGAAAATCTGTAT 1903587 >seq8 Length=2103943 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||| | ||| ||| | |||||| || | |||||||| | | || ||| | Sbjct 374098 GAGTTCTTGACCGAGGCTCTCCCTTGCGCCCTCCTTGGCATGAACTCCAACCTGATGAAG 374157 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || || || ||||| || |||||| | | || || || || ||||||| | || Sbjct 374158 CAGTACATTGAGTTCGTCGCCGATCGTCTGCTTGTCGCTCTCGGCAACGAGAAGATCTAC 374217 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 || || |||||||||| || |||||| |||||| ||| || || || |||||| Sbjct 374218 AAGTCTGCCAACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTC 374277 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||| ||||| ||| ||| || || | | | ||||| Sbjct 374278 TTCGAGAAGCGCGTCGCCGACTACCAGAAGGCTGGTGT 374315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738355085202