Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20guizhouense_20[genbank_20GCA_5F002022785.1_202017-03-
07] 63 sequences; 38,329,450 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq7 152 5e-32
seq2 129 5e-25
seq3 109 5e-19
>seq7
Length=2414983
Score = 152 bits (168), Expect = 5e-32
Identities = 174/232 (75%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || || ||||||||| ||||| |||||||||
Sbjct 819906 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 819847
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || |||||||| || ||||| |||| ||||| ||||||| ||||
Sbjct 819846 AGGGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 819787
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| |||||||
Sbjct 819786 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 819729
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| | || ||||| || ||||| || ||||| |||||||||||||| ||
Sbjct 819728 CCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 819677
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct 116160 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 116101
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||| |||||||| ||||| ||||| ||||| ||||| | |||
Sbjct 116100 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 116041
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| || ||||| | | | | || ||| ||||||||
Sbjct 116040 ATGCCCTCCTTGTCCTGGATCTTGGACTTCA-CATTGTCGATGGTATCGGAAGACTCCAC 115982
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || || || || || || || ||||| ||||| || ||||||
Sbjct 115981 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 115933
Score = 107 bits (118), Expect = 2e-18
Identities = 111/144 (77%), Gaps = 1/144 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||| ||||| |||||||||||||| ||||| ||||||
Sbjct 116546 GCCACCACGAAGACGCAGAACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCT 116487
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
| |||||| |||| || |||||||| || || || |||| |||||| ||||| | ||
Sbjct 116486 CAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 116427
Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778
|| | |||||||||| |||| ||
Sbjct 116426 AATACCCTCCTTGTCC-TGATCTT 116404
>seq2
Length=3541710
Score = 129 bits (142), Expect = 5e-25
Identities = 140/184 (76%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||||| |||||||| | || |||||||||||||| || || |
Sbjct 89114 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 89055
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| ||||| ||||||| ||||| || |||||||||| ||| || ||| || |
Sbjct 89054 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 88995
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||| ||||| ||||| | || || || || |||||||| ||||| ||
Sbjct 88994 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 88937
Query 41851 GAAA 41854
||||
Sbjct 88936 GAAA 88933
>seq3
Length=3158035
Score = 109 bits (120), Expect = 5e-19
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 41665 CGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724
|||||||| |||||| ||||| |||||| | |||| | |||| || |||||||| ||
Sbjct 1903390 CGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACCGTCTTCCAGCTGCTTACC 1903449
Query 41725 GGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT 41784
||||| || | |||||| ||||| | ||||| || ||| |||||| ||| | || | |
Sbjct 1903450 AGCGAAGATTAAGCGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCC-TGAATCTTGGACT 1903508
Query 41785 CAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCG 41843
||| | | | |||||| || ||||||| | || || || || || || || |
Sbjct 1903509 TGACGTTGTCGATGGTGTCGGAAGATTCCACCTTAAGGGTAATTGTCTTGCCGGTGAGAG 1903568
Query 41844 TCTTTACGAAAATCTGCAT 41862
|||| ||||||||||| ||
Sbjct 1903569 TCTTGACGAAAATCTGTAT 1903587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303635935600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |