Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq246 136 8e-27 >seq246 Length=51316 Score = 136 bits (150), Expect = 8e-27 Identities = 274/404 (68%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| |||| | |||||||| || | || |||||| ||| Sbjct 23338 CCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCA 23279 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGA 230356 || ||| ||||||||||| || | || | | || || | || | ||| ||| Sbjct 23278 TCTCTCGTGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGA 23219 Query 230357 ACAA-GCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415 || |||| || ||| | || | ||||| || || || || || || || Sbjct 23218 ACCGTGCTAGCAAG-GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAG 23160 Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||| | || ||| | || || ||| ||||||||||| | | || ||| Sbjct 23159 GAGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAG 23100 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 |||||||| || || || ||||| || | |||| || || || ||||||| | ||| Sbjct 23099 CAGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTAC 23040 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 || ||| |||||||||| || |||||| |||||| || || |||||||||||| Sbjct 23039 AAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTC 22980 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 ||||| ||||| ||| ||||| |||| | ||||||| ||||| Sbjct 22979 TTCGAGAAGCGCGTCGCCGACTACCAGAAGGCTGGTGTCATGAA 22936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057802694102360