Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq246 138 1e-27
>seq246
Length=51316
Score = 138 bits (152), Expect = 1e-27
Identities = 573/888 (65%), Gaps = 31/888 (3%)
Strand=Plus/Plus
Query 16652 TGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTT 16711
|||| |||| || || || |||| |||| ||| ||||| || ||||| ||||| ||
Sbjct 22934 TGTTCATGA-CACCAGCC-TTCT--GGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTC 22989
Query 16712 TTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTT 16769
||||| | ||||| || ||||||||||| ||||| || || | || || | || ||
Sbjct 22990 TTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTC 23049
Query 16770 TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTA 16829
| | | || || || | | | | ||| || ||||| || || || || ||| |
Sbjct 23050 TCG--TTGCCTAGAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCA 23107
Query 16830 ATTCGCAGTTCATTCCTATAAGA-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCT 16888
| | ||||||| || | || || | ||| |||| || ||||| || |||||
Sbjct 23108 GGTTGGAGTTCATGCCAAGCAGGGCGCAGGGGA-GAGCCTCGGTCAAGAACTCCTGCTCA 23166
Query 16889 ATAACAACCGCTTCCTTAATAAT---ACT-AGCAACTCGTTCCTCGGACGGTGTATGTTT 16944
|| || || || | || || || | || ||| || || | ||||| ||
Sbjct 23167 ATTCGGACAGCATCAGTGATGATGTCACGGATCACCTCCTTGCTAGCACGGTTCTTG--- 23223
Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004
|| || || ||| || || || || || | |||||||| | ||| ||
Sbjct 23224 -AGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAG 23282
Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064
||||| ||||| |||| || ||||| ||||| ||||| | ||| || || | |||
Sbjct 23283 CTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 23342
Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124
|| | || ||||| ||||||||||||| ||||| || | | || | ||| |
Sbjct 23343 AAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAA 23402
Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTATGCAAT 17183
| | || |||| | ||||| || |||| ||||| || |||| ||||||
Sbjct 23403 GGAAGAGTTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGA-ATGCAAG 23461
Query 17184 CCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTA 17242
|| || || ||||| || || | | || | |||| || | || || ||
Sbjct 23462 GAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC-TCCTTGATGTAGGTG 23520
Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302
|||||||| ||| ||| | |||||||| ||||||||||| ||||| || |||||
Sbjct 23521 TCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 23580
Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362
|||||||| || || | || || || || || ||| || || | || || |||||
Sbjct 23581 AAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTG 23640
Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422
|| ||||| || ||||| || || |||| || || ||||| || || |||||
Sbjct 23641 ACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCA 23700
Query 17423 GGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGG 17476
| || ||| ||| || | | ||| ||||| | ||| | ||||||| |
Sbjct 23701 TCATTCAG---GCGGTTATTCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCG 23757
Query 17477 GTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524
||||| || || | |||||||| ||||| | ||| || | ||||
Sbjct 23758 GTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCAGATCTAATTG 23805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517535430228960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |