Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq246 138 1e-27 >seq246 Length=51316 Score = 138 bits (152), Expect = 1e-27 Identities = 573/888 (65%), Gaps = 31/888 (3%) Strand=Plus/Plus Query 16652 TGTTTATGAACAACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTT 16711 |||| |||| || || || |||| |||| ||| ||||| || ||||| ||||| || Sbjct 22934 TGTTCATGA-CACCAGCC-TTCT--GGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTC 22989 Query 16712 TTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTT 16769 ||||| | ||||| || ||||||||||| ||||| || || | || || | || || Sbjct 22990 TTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTC 23049 Query 16770 TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTA 16829 | | | || || || | | | | ||| || ||||| || || || || ||| | Sbjct 23050 TCG--TTGCCTAGAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCA 23107 Query 16830 ATTCGCAGTTCATTCCTATAAGA-CGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCT 16888 | | ||||||| || | || || | ||| |||| || ||||| || ||||| Sbjct 23108 GGTTGGAGTTCATGCCAAGCAGGGCGCAGGGGA-GAGCCTCGGTCAAGAACTCCTGCTCA 23166 Query 16889 ATAACAACCGCTTCCTTAATAAT---ACT-AGCAACTCGTTCCTCGGACGGTGTATGTTT 16944 || || || || | || || || | || ||| || || | ||||| || Sbjct 23167 ATTCGGACAGCATCAGTGATGATGTCACGGATCACCTCCTTGCTAGCACGGTTCTTG--- 23223 Query 16945 AAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAG 17004 || || || ||| || || || || || | |||||||| | ||| || Sbjct 23224 -AGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAG 23282 Query 17005 TTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 ||||| ||||| |||| || ||||| ||||| ||||| | ||| || || | ||| Sbjct 23283 CTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 23342 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124 || | || ||||| ||||||||||||| ||||| || | | || | ||| | Sbjct 23343 AAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAA 23402 Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT-TTGCTTTATGCAAT 17183 | | || |||| | ||||| || |||| ||||| || |||| |||||| Sbjct 23403 GGAAGAGTTCTTGTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGA-ATGCAAG 23461 Query 17184 CCATCGTTTCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTA 17242 || || || ||||| || || | | || | |||| || | || || || Sbjct 23462 GAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTC-TCCTTGATGTAGGTG 23520 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 |||||||| ||| ||| | |||||||| ||||||||||| ||||| || ||||| Sbjct 23521 TCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 23580 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 |||||||| || || | || || || || || ||| || || | || || ||||| Sbjct 23581 AAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTG 23640 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| || ||||| || || |||| || || ||||| || || ||||| Sbjct 23641 ACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCA 23700 Query 17423 GGTGTAAGAACGCG------CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGG 17476 | || ||| ||| || | | ||| ||||| | ||| | ||||||| | Sbjct 23701 TCATTCAG---GCGGTTATTCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCG 23757 Query 17477 GTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524 ||||| || || | |||||||| ||||| | ||| || | |||| Sbjct 23758 GTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCAGATCTAATTG 23805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517535430228960