Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq246 109 6e-19
>seq246
Length=51316
Score = 109 bits (120), Expect = 6e-19
Identities = 184/264 (70%), Gaps = 3/264 (1%)
Strand=Plus/Plus
Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561
|| ||||| |||||||| || ||||| || || ||||||||||||||||| | ||
Sbjct 23542 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 23601
Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621
|| || || || || || || |||||||||| || || || || ||| || |||
Sbjct 23602 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 23661
Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-GATGTA--AGAATATGCCAA 16678
|| || |||| ||||| ||||| || || |||||| || | | ||| ||||
Sbjct 23662 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAA 23721
Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738
|| | | ||| ||||| | ||| | ||||| | ||||| ||| || | ||||||
Sbjct 23722 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTT 23781
Query 16739 TTATACATTTTCCAAATATCATTG 16762
|| ||||||| ||| || | ||||
Sbjct 23782 TTGTACATTTGCCAGATCTAATTG 23805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511404350707040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |