Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq246 109 6e-19 >seq246 Length=51316 Score = 109 bits (120), Expect = 6e-19 Identities = 184/264 (70%), Gaps = 3/264 (1%) Strand=Plus/Plus Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || ||||| |||||||| || ||||| || || ||||||||||||||||| | || Sbjct 23542 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATC 23601 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || || || || || || || |||||||||| || || || || ||| || ||| Sbjct 23602 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCA 23661 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCA-GATGTA--AGAATATGCCAA 16678 || || |||| ||||| ||||| || || |||||| || | | ||| |||| Sbjct 23662 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAA 23721 Query 16679 TCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTT 16738 || | | ||| ||||| | ||| | ||||| | ||||| ||| || | |||||| Sbjct 23722 TCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTT 23781 Query 16739 TTATACATTTTCCAAATATCATTG 16762 || ||||||| ||| || | |||| Sbjct 23782 TTGTACATTTGCCAGATCTAATTG 23805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511404350707040