Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq246 138 1e-27
seq236 122 1e-22
>seq246
Length=51316
Score = 138 bits (152), Expect = 1e-27
Identities = 357/543 (66%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208
||| ||||||||||| | | || | ||||||||||| || || || ||||| || ||
Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315
Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268
||||| || ||||| || ||||| ||||| | || ||||| || || || || ||
Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375
Query 24269 CGCAAAGGCAATAAGTCTTTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 24325
|||||||||| || | | || || | |||| || |||||||| ||
Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435
Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385
||| ||||||||||| | ||||| || ||||| || || || ||||| ||| |
Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495
Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445
| | | || || | || || || || | || || | || || || |||||
Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555
Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505
|| || || || || |||||||| |||| |||||||| ||||| || || |
Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615
Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565
|| || || | | || || || || || || ||| ||| ||||| || |||| |
Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675
Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 24622
|| || || || || ||||| | | | ||||||||||| | | ||| ||
Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735
Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682
|| | ||| | ||||| | ||||| || || || || |||||||| ||||| | |||
Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795
Query 24683 GAT 24685
|||
Sbjct 23796 GAT 23798
>seq236
Length=53426
Score = 122 bits (134), Expect = 1e-22
Identities = 621/975 (64%), Gaps = 24/975 (2%)
Strand=Plus/Minus
Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769
||| |||| || ||||| || ||||||| | | | || | || ||||| |||||
Sbjct 6023 AGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCA 5964
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829
|| || | ||||||||| | || | || || ||||| ||| || |||||
Sbjct 5963 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATC 5904
Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889
||| || || ||||| || ||||||| || |||||| ||| | || | | ||| |
Sbjct 5903 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAG 5844
Query 53890 GACACGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGTATAGTGTATACAA 53946
|||| || || ||| | | | | ||| | |||||| ||||||
Sbjct 5843 CTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAA 5787
Query 53947 TCGTTCAAACTCGTCTCCCCAAA-CATTGT-CCAATCCAGGACATTCATCCGGACACATC 54004
|| ||||| ||| ||| | || | ||| ||||| ||||| | || |||||
Sbjct 5786 AGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATG 5729
Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064
| || ||| || || | || || || ||||| |||||||| |||||||| |||||
Sbjct 5728 AGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCA 5669
Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124
| || | || | | | || || || || ||||| ||||| ||||||
Sbjct 5668 AGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAC 5609
Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184
| | | || | ||||| || || | ||| |||| | | ||||| || |||||
Sbjct 5608 TCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTA 5549
Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244
|| ||||| || | ||||| || ||||| || | |||| | ||| |||||||||||
Sbjct 5548 CCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCG 5489
Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTG 54302
|| || | ||| ||||| || | || || || ||||||| || | | ||
Sbjct 5488 TTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTC 5429
Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362
| || || || || || ||||| || || || | || ||| || | || |||||||
Sbjct 5428 A-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGA 5371
Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422
| ||||| || ||||| ||| |||||| | | || || |||| ||| |
Sbjct 5370 TACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCG 5311
Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482
|| || || || || | ||| ||||| || || || || | || ||| | || |
Sbjct 5310 GGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGGT 5251
Query 54483 TGTACGTCTC---GATA-GCTGAGTCT-ATATCCCATTGATGAATTCCTACTGCGACACG 54537
|||| ||||| || | ||| | | | | |||| |||| || || | || ||
Sbjct 5250 TGTATGTCTCCAGGACACGCTCAATGTCGTCTCCC-CAGATG----CCAACAGACACTCG 5196
Query 54538 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTT 54597
||| | ||||||||| || | ||||| |||||| | | ||||| | ||| ||
Sbjct 5195 CATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGAACG 5136
Query 54598 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGA 54657
|||| ||| || || || || || | ||| |||||||| ||||| | ||| | ||
Sbjct 5135 CTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGA 5076
Query 54658 GTTGAGTTTATCCTT 54672
|| ||| | |||||
Sbjct 5075 GTCGAGCTCCTCCTT 5061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593709933370560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |