Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq246 138 1e-27 seq236 122 1e-22 >seq246 Length=51316 Score = 138 bits (152), Expect = 1e-27 Identities = 357/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||| | | || | ||||||||||| || || || ||||| || || Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 24325 |||||||||| || | | || || | |||| || |||||||| || Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 ||| ||||||||||| | ||||| || ||||| || || || ||||| ||| | Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 | | | || || | || || || || | || || | || || || ||||| Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 || || || || || |||||||| |||| |||||||| ||||| || || | Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 || || || | | || || || || || || ||| ||| ||||| || |||| | Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 24622 || || || || || ||||| | | | ||||||||||| | | ||| || Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682 || | ||| | ||||| | ||||| || || || || |||||||| ||||| | ||| Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795 Query 24683 GAT 24685 ||| Sbjct 23796 GAT 23798 >seq236 Length=53426 Score = 122 bits (134), Expect = 1e-22 Identities = 621/975 (64%), Gaps = 24/975 (2%) Strand=Plus/Minus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| |||| || ||||| || ||||||| | | | || | || ||||| ||||| Sbjct 6023 AGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCA 5964 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || || | ||||||||| | || | || || ||||| ||| || ||||| Sbjct 5963 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATC 5904 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || ||||||| || |||||| ||| | || | | ||| | Sbjct 5903 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAG 5844 Query 53890 GACACGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGTATAGTGTATACAA 53946 |||| || || ||| | | | | ||| | |||||| |||||| Sbjct 5843 CTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAA 5787 Query 53947 TCGTTCAAACTCGTCTCCCCAAA-CATTGT-CCAATCCAGGACATTCATCCGGACACATC 54004 || ||||| ||| ||| | || | ||| ||||| ||||| | || ||||| Sbjct 5786 AGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACATG 5729 Query 54005 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 54064 | || ||| || || | || || || ||||| |||||||| |||||||| ||||| Sbjct 5728 AGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCA 5669 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 | || | || | | | || || || || ||||| ||||| |||||| Sbjct 5668 AGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAC 5609 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | | || | ||||| || || | ||| |||| | | ||||| || ||||| Sbjct 5608 TCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTA 5549 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | ||||| || ||||| || | |||| | ||| ||||||||||| Sbjct 5548 CCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCG 5489 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTG 54302 || || | ||| ||||| || | || || || ||||||| || | | || Sbjct 5488 TTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTTC 5429 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | || || || || || ||||| || || || | || ||| || | || ||||||| Sbjct 5428 A-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGA 5371 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | ||||| || ||||| ||| |||||| | | || || |||| ||| | Sbjct 5370 TACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCG 5311 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 || || || || || | ||| ||||| || || || || | || ||| | || | Sbjct 5310 GGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGGT 5251 Query 54483 TGTACGTCTC---GATA-GCTGAGTCT-ATATCCCATTGATGAATTCCTACTGCGACACG 54537 |||| ||||| || | ||| | | | | |||| |||| || || | || || Sbjct 5250 TGTATGTCTCCAGGACACGCTCAATGTCGTCTCCC-CAGATG----CCAACAGACACTCG 5196 Query 54538 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTT 54597 ||| | ||||||||| || | ||||| |||||| | | ||||| | ||| || Sbjct 5195 CATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGAACG 5136 Query 54598 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGA 54657 |||| ||| || || || || || | ||| |||||||| ||||| | ||| | || Sbjct 5135 CTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGA 5076 Query 54658 GTTGAGTTTATCCTT 54672 || ||| | ||||| Sbjct 5075 GTCGAGCTCCTCCTT 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709933370560