Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq363 205 1e-47 >seq363 Length=36312 Score = 205 bits (226), Expect = 1e-47 Identities = 536/819 (65%), Gaps = 74/819 (9%) Strand=Plus/Plus Query 145516 TCCTTCCCCTCTCCC--CCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGT 145573 ||| || ||||||| || |||||| | ||| | |||||| || | |||||||| Sbjct 13234 TCCATCGCCTCTCCAGGCCTGGTTAGACGGACATGTTCATGGGAATCGATTTGTGGGGGT 13293 Query 145574 GGTAGCCCTCCAGCGCAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCA 145633 ||| || | | | | |||||||| || | || |||| ||| | || ||| ||| Sbjct 13294 CGTAACCTTTGACCACGAAGTCCTCGACCTTCCAGCCATCGATG-CTGCCGCCCTTCTCC 13352 Query 145634 GG----ATCCTGAGCCTGGGAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGG 145688 | ||| ||| ||| || ||||| || ||| | || ||||| ||| || | Sbjct 13353 CGCGTAATCTCCAGCTCGGGGAACGGCCGAGG-CTCACGCTCCAGCTGCGTCTTGAGAGC 13411 Query 145689 CTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTC 145748 || | ||||| || ||||||||| ||||| |||| ||||||| ||| | |||||| | Sbjct 13412 GTCGATGTGGTCGATGTAGACGTGTGCGTCTCCCATGACGTGGGTGAGGCTTCCGGGCAC 13471 Query 145749 GAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGG 145808 || | | ||| |||| ||||| || ||||| | |||||||| ||||||||||| Sbjct 13472 CAGATCGCACACGTGAGCGAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGG 13531 Query 145809 CACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCT--CCC----- 145861 | || || |||||||| | || |||||||| ||||||||| ||| | ||| Sbjct 13532 GATGCCGAGGCCCATGTCGCAGGACCGCTGGTATAGCTGGCAGTGGAGGTGGCCCTTTGG 13591 Query 145862 --------------------------CGCC--CGCCACGT-------------------- 145873 |||| |||| ||| Sbjct 13592 CTTGTTCTCTTCCGTAGGTTCTGCGGCGCCAACGCCCCGTCCACGTCCAGGGTACGAGAC 13651 Query 145874 --AGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTT 145931 |||||||| | | |||||||||||||||||||||| | ||| |||||| Sbjct 13652 GTAGAACTGGGCAAACATGTGGCAGGGCGGCAGGGCCATGCTCTTGAAGTCTCGCGGGTT 13711 Query 145932 CCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTC 145991 ||| ||| |||||| | |||| | | ||||| | | || || | || Sbjct 13712 CCATGCGCTGAGGATCATTCTCCGGTCGTAAGGGTTGTTGCGAAGCTTGTGGAT--GATC 13769 Query 145992 CCTG--AGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCC 146049 ||| |||||||| ||||||| || ||| || | ||| | ||||||||| |||| Sbjct 13770 TCTGCCAGCTGGTCGACGCCCTTGCCGGCGTAGTCCGCCTTTGCATCCACGTACTCGGCG 13829 Query 146050 CCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCC 146109 || ||||||| ||||||||| ||||||||||| |||||||| ||| ||| | ||| | Sbjct 13830 CCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCACCGACCTCGCGGTGGGTC 13889 Query 146110 AGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CC 146167 || ||| | | | ||||||| || |||||||| ||| ||||||||||||||||||| | Sbjct 13890 AGGCCGACGCTGTCGAGGAACTCGCGGGACCCATTGCCGTCCCAGATCTTGACGCCGACG 13949 Query 146168 TCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGA 146227 ||| ||| || || | || ||| ||| |||||||||||| ||||| ||| || Sbjct 13950 TCGTTGAGGGC-GATAGAAG-ATGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGA 14007 Query 146228 CCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 | | | |||||| | || || || ||||| |||| Sbjct 14008 CGGCTCGGAGGAAGACTCGTTTTGTTGTGAGCAGAGGGA 14046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590065204990880