Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq330 113 4e-20
seq301 93.3 4e-14
>seq330
Length=39978
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | ||||||||||| || ||||| ||||| | |
Sbjct 15484 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15543
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| || | ||||| || || ||||| || |||| || | ||||||||| ||
Sbjct 15544 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 15603
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||| || |||||| ||||| | | ||| ||||| | |||
Sbjct 15604 ATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 15663
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||||||||| | || ||||| || ||||||||
Sbjct 15664 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043
|||||| || ||||| ||||| || ||| | ||||||| ||||| ||||| ||| |
Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064
Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103
||||| | |||||| ||| ||| | || |||||||| |||||| ||| || |
Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGATTTGACATT 15124
Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163
| ||| || || | || |||| || |||||||||||||| ||||| |||||
Sbjct 15125 GTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGAC 15184
Query 21164 AAATATTTGCAT 21175
|| || |||||
Sbjct 15185 GAAGATCTGCAT 15196
Score = 93.3 bits (102), Expect = 4e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037
|||||||||||| || ||||| ||||| | |||||| || | ||||| ||||| || ||
Sbjct 15227 AGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACC 15286
Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097
|| | || |||| ||||||||| || | ||| |||||||| |||||| ||
Sbjct 15287 AGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 15346
Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157
|| | | ||| |||||| | |||| || | ||| |||||||| || || | ||
Sbjct 15347 GACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGT 15406
Query 21158 TTTGAC 21163
|||||
Sbjct 15407 CTTGAC 15412
>seq301
Length=43884
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | || |||||||| || ||||| ||||| |
Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| || | ||||||||||| || || || | || | || |||||||||| |||
Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | ||| || || | ||||
Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 7687
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | ||| || ||||| || || | || ||||| || || ||||| |||
Sbjct 7688 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 7738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422251110041552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |