Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq246 309 3e-79 seq330 136 4e-27 seq301 136 4e-27 seq23 123 3e-23 seq61 120 3e-22 >seq246 Length=51316 Score = 309 bits (342), Expect = 3e-79 Identities = 547/793 (69%), Gaps = 17/793 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||||||||||||||| || || |||||||||| ||| ||| | || ||| Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||| ||| | ||| |||| || ||||| | |||||| Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGCCTGAATGATGACGAGAAGTACTTCATCTCT 23679 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| || |||||| || ||||| ||||||||||| ||||||||||| Sbjct 23678 CACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCGC 23619 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || |||||||||||||| |||||| ||| Sbjct 23618 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGATG 23559 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 |||||| | ||||| || | || || ||||||||||| ||| | |||| Sbjct 23558 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACAT------CAAGGAG 23505 Query 116933 GAGA---AGCTCCGTT---TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAG 116986 | | ||| | | | | || |||||||| ||||| || || ||| | ||||| Sbjct 23504 AACAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAG 23445 Query 116987 GCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTG 117046 ||||| ||||| | |||||| | || | | |||| | | |||||||||| Sbjct 23444 GCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTT 23385 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| || ||||||||||| ||||||| || || ||| |||| || |||||| Sbjct 23384 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTC 23325 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| || || |||||||| || ||||| || ||||||||||||||| | |||||| Sbjct 23324 AAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 23265 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG 117226 |||||||| ||||||||||| ||||| | || | | | || | ||| | Sbjct 23264 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCACCTCAAGAACCGTGCTAGCAAG 23205 Query 117227 GCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAA 117286 | | || | || ||| |||| || || ||| || |||||| ||| | ||||| Sbjct 23204 GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGACCGAG 23145 Query 117287 GCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTT 117345 || || || |||| ||||| || | || | | | |||| ||| ||||| ||||| Sbjct 23144 GCTCT-CCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTT 23086 Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405 || ||||| | ||||| ||| || | | || ||| |||||| | ||||||| Sbjct 23085 TGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGCCAACCC 23026 Query 117406 GCTGGACTTTATG 117418 | ||||| ||| Sbjct 23025 CTTTGACTTCATG 23013 >seq330 Length=39978 Score = 136 bits (150), Expect = 4e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| |||| || ||| | || Sbjct 14968 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 14909 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| |||||||| || | ||||| Sbjct 14908 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 14850 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || |||||||| |||| |||||| | | ||||||||| Sbjct 14849 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAA 14790 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 14789 CATCCAGAAGGAGAGCACACTGCA 14766 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| |||||||| | || || ||| | | Sbjct 15196 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 15137 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||| |||| ||||| ||||| || ||| |||| ||| Sbjct 15136 GACACCATCGACAATGTCAAATCAAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 15077 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || |||| |||||| | | |||||||||| Sbjct 15076 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGCGACTACAAC 15017 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| ||| || || || || Sbjct 15016 ATCCAGAAGGAGAGCACACTTCACCTTGT 14988 Score = 125 bits (138), Expect = 7e-24 Identities = 151/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40697 TATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG 40756 || |||| || || ||||| || || ||||||||| |||| || || | | || | | Sbjct 15417 TAGTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTGGAGTCATCTGATACCA 15358 Query 40757 TGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | |||| ||||| || || | ||||| ||||||||||| | |||||||| ||| Sbjct 15357 TCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAGCAGCGA 15299 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || |||| ||| || || ||||| || || | || |||||| |||||||||||||||| Sbjct 15298 CTGATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACCCTCTCCGACTACAACATCCAG 15239 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||| || || || || Sbjct 15238 AAGGAGTCCACTCTCCACCTTGT 15216 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 15710 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTCC 15651 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | || || || ||||| || | |||||| Sbjct 15650 GATACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 15591 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| || || || || | || || || |||||||||| Sbjct 15590 CAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAAC 15531 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 15530 ATCCAGAAGGAGTCCACCCTCCACCTGGT 15502 >seq301 Length=43884 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 7737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 7678 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||| ||| ||||| Sbjct 7677 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 7618 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||| | |||| ||| || || |||||||| || | || || ||| ||||||| Sbjct 7617 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTAC 7558 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || || || || ||||| || | || || Sbjct 7557 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 7508 >seq23 Length=158060 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 67574 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 67515 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| ||| | Sbjct 67514 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 67455 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 67454 ATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAG 67395 Query 40879 G 40879 | Sbjct 67394 G 67394 >seq61 Length=119690 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || ||||| || || |||| ||||| || |||||| || | || ||| | || Sbjct 2758 ATACAGATTTTCGTCAAGACCTTCACCGGCAAGACAATCACCCTCAAGGTGGAATCTTCC 2817 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| |||||||||||||| | | | ||||| Sbjct 2818 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAAGAGGGCATTCGCCCTGACCA 2876 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||||||| || || |||||||| ||| | |||| | | ||||||||| Sbjct 2877 GCAGCGCTTGATCTACGCTGGTAAGCAGCTGGAAGACAGTCACACCTTGAGCGACTACAA 2936 Query 40869 CATCCAGAAGGAG 40881 |||||||||| || Sbjct 2937 CATCCAGAAGAAG 2949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209075942720