Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq330 127 2e-24
seq301 104 3e-17
seq23 87.8 2e-12
>seq330
Length=39978
Score = 127 bits (140), Expect = 2e-24
Identities = 162/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| |||| |||||||||||| || || ||||| || || || || |
Sbjct 14753 ACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACC 14812
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||||||||| || || | ||||||||||| | || | || ||||||
Sbjct 14813 GTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTT 14872
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
|||| ||| | || | |||| ||| | | | |||||| |||||||| |||| |||
Sbjct 14873 GTCC-TGAATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTG 14930
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || ||||| || || ||||| || || || |||||
Sbjct 14931 ATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 104 bits (114), Expect = 3e-17
Identities = 144/199 (72%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 42986 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 43045
|||||||||||| || || ||||| || || || || |||| || |||||||| ||
Sbjct 14999 TGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCC 15058
Query 43046 AGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TT 43104
||| || || || |||||||| || | || | | |||||||||| ||| | |||| ||
Sbjct 15059 AGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGATT 15117
Query 43105 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 43164
||| | | | ||||| ||||| || || | |||||||| ||||| || | ||
Sbjct 15118 TGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACG 15177
Query 43165 TCTTTACAAAGATTTGCAT 43183
|||| || ||||| |||||
Sbjct 15178 TCTTGACGAAGATCTGCAT 15196
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || | || || |||||||||||||||||
Sbjct 15233 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAA 15292
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| |||||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 15293 GATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 15351
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || || || ||||| |||| |||||||| || || || || ||||| |
Sbjct 15352 TGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGA 15411
Query 43171 C 43171
|
Sbjct 15412 C 15412
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | |||||| || | || || || ||||| ||||||||
Sbjct 15519 CTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAA 15578
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || ||||| ||| ||| || || | |
Sbjct 15579 AATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGACTTCACATT 15638
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | || ||| || || || |||| |||||||| ||||| || || ||||| ||
Sbjct 15639 GTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 15698
Query 43172 AAAGATTTGCAT 43183
|||||||||||
Sbjct 15699 GAAGATTTGCAT 15710
>seq301
Length=43884
Score = 104 bits (114), Expect = 3e-17
Identities = 140/195 (72%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||||| || | || || |||||||||||||||||
Sbjct 7543 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 7602
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| | |||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 7603 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 7662
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | |||||| || ||||| || | ||||| || || ||||| || ||||| ||
Sbjct 7663 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 7722
Query 43172 AAAGATTTGCATTTT 43186
|| || ||||| ||
Sbjct 7723 GAAAATCTGCATCTT 7737
>seq23
Length=158060
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | || || || | || || |||||||| ||||| || |
Sbjct 67394 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 67453
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 67454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 67513
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||||| || || || || | |||||||| |||||||| || ||||| || |
Sbjct 67514 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 67573
Query 43174 A 43174
|
Sbjct 67574 A 67574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571806363784160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |