Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq330 116 2e-21
seq301 114 8e-21
seq23 98.7 6e-16
>seq330
Length=39978
Score = 116 bits (128), Expect = 2e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || || ||||| ||||||||||||||||| ||| | ||
Sbjct 15499 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 15558
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||||| |||||||| || ||||||||||| || | || ||||| ||
Sbjct 15559 TCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 15618
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | || | | || | ||||| || ||||| || | ||||||||
Sbjct 15619 TGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTC 15678
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||||||||| || || || ||||| |||||
Sbjct 15679 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| |||| ||| | || || || ||||| |||||||||||| |
Sbjct 14742 CCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 14801
Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || || |||| |||| |||||| || || || || | ||||||||||| ||
Sbjct 14802 AAGGTG-CGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 14860
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | | | | || | |||| ||||| ||
Sbjct 14861 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCAC 14920
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || |||||||| ||||| || || || ||||||||
Sbjct 14921 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 102 bits (112), Expect = 5e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AGCTGACGGTCGTC 34236
|| || ||||| | || || || ||||| |||||||||||| | || || || ||||
Sbjct 14985 AGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTG-CGACCGTC 15043
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
|| | ||||||||| || || || || |||||||| || ||| | | |||||||||
Sbjct 15044 CTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTC 15103
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
|||||| || | || | | || | || | ||||| || |||| ||||||||
Sbjct 15104 CTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGT 15163
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||| | || || || |||||||||||
Sbjct 15164 CTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196
Score = 82.4 bits (90), Expect = 5e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| || ||||| | ||| || ||||| |||||||||||||| || ||| | ||
Sbjct 15213 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 15272
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | |||||| || ||||| || || ||||||||||| || | || |||||||||
Sbjct 15273 TCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 15332
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | ||| | || || || || | ||||||||
Sbjct 15333 TGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACCTCGAGGGTGATGGTC 15392
Query 34358 TTGCCGGTGAGAGTTTTCAC 34377
|| || ||||| || || ||
Sbjct 15393 TTTCCAGTGAGGGTCTTGAC 15412
>seq301
Length=43884
Score = 114 bits (126), Expect = 8e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| |||||||| | ||| || ||||| ||||||||||||||
Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||| || ||||| || | ||||||||||| |||
Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | |||| || || ||
Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 7687
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||| || || || ||||| || || || || |||||||||
Sbjct 7688 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATC 7735
>seq23
Length=158060
Score = 98.7 bits (108), Expect = 6e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||||| || ||| | || || | ||||||||| || || ||
Sbjct 67396 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATC 67455
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| ||||||||||| ||| | || ||||||||| ||||| ||| | || | |
Sbjct 67456 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 67515
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380
|||| |||| || ||||| || | |||||||| ||||| || || || ||||| ||
Sbjct 67516 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 67574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323065810344320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |