Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq236 93.3 9e-14 >seq236 Length=53426 Score = 93.3 bits (102), Expect = 9e-14 Identities = 241/360 (67%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||||| ||| || | ||| | | ||| | ||||| || Sbjct 5070 CTCGACTCCGCCATTGTCTACGATCGAGACTTCAACTACCAATACTTCGGCTTCAAGACT 5129 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 |||||| || || || || || ||||||||||||| || || || ||||||||| Sbjct 5130 CTGGAGCGTTCATACCTTCTGAAGCTTGATGGCAAGATTGTTGAGCGGCCCCAGCACATG 5189 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||||||| |||| || || || ||||| ||| | || || ||||| ||| Sbjct 5190 ATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTCCTGGAGACATAC 5249 Query 248962 ACCGGAATGAGT-GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | | ||| | | | | | | || |||||| | || || || |||||||| ||||| Sbjct 5250 AACCTCATGTCTAGCAAG-TTCTTCACTCATGCCTCTCCCACCCTGTTCAACGCAGGTAC 5308 Query 249021 CGTCAACAA--TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078 | | ||| |||||| ||| ||||| | | | |||| | ||||| |||| Sbjct 5309 C--CCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGATAGCATCGAG 5366 Query 249079 GGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGG 249137 || || |||||||| || || ||| || | |||||| || | || || || ||||| Sbjct 5367 GGTATCTATGACACTCTGAAGACA-TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGG 5425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073744773002496