Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq236 93.3 9e-14
>seq236
Length=53426
Score = 93.3 bits (102), Expect = 9e-14
Identities = 241/360 (67%), Gaps = 8/360 (2%)
Strand=Plus/Plus
Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841
|| ||| ||| |||| ||||| ||| || | ||| | | ||| | ||||| ||
Sbjct 5070 CTCGACTCCGCCATTGTCTACGATCGAGACTTCAACTACCAATACTTCGGCTTCAAGACT 5129
Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901
|||||| || || || || || ||||||||||||| || || || |||||||||
Sbjct 5130 CTGGAGCGTTCATACCTTCTGAAGCTTGATGGCAAGATTGTTGAGCGGCCCCAGCACATG 5189
Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961
| ||||||||| |||| || || || ||||| ||| | || || ||||| |||
Sbjct 5190 ATTATGCGAGTGTCTGTTGGCATCTGGGGAGACGACATTGAGCGTGTCCTGGAGACATAC 5249
Query 248962 ACCGGAATGAGT-GAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020
| | ||| | | | | | | || |||||| | || || || |||||||| |||||
Sbjct 5250 AACCTCATGTCTAGCAAG-TTCTTCACTCATGCCTCTCCCACCCTGTTCAACGCAGGTAC 5308
Query 249021 CGTCAACAA--TCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGAC 249078
| | ||| |||||| ||| ||||| | | | |||| | ||||| ||||
Sbjct 5309 C--CCGCAAGCCCAGCTGTCCTCATGCTTCTTGGTCGACATGAAGGACGATAGCATCGAG 5366
Query 249079 GGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGG 249137
|| || |||||||| || || ||| || | |||||| || | || || || |||||
Sbjct 5367 GGTATCTATGACACTCTGAAGACA-TGTGCCATGATTTCCAAGATGGCTGGTGGTATCGG 5425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073744773002496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |