Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq330 147 2e-30 seq301 111 1e-19 >seq330 Length=39978 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| |||||||||||||| |||||||||||| ||| |||| |||| ||| Sbjct 14760 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 14819 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| ||||| ||||| ||||| | |||||||||||| | Sbjct 14820 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 14879 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | |||||||| | ||| || |||||| Sbjct 14880 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCTTG 14939 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| || || || ||||| Sbjct 14940 CCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| |||||||||||| ||| |||| |||| || || || Sbjct 14993 GTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTG 15052 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | ||||| || || || || | ||||||||||||| ||| || Sbjct 15053 CTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 15112 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | || || | | | |||| || ||||||| || || |||||||| || Sbjct 15113 TGATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGT 15172 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 15173 CAACGTCTTGACGAAGATCTGCAT 15196 >seq301 Length=43884 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || | || ||| Sbjct 7526 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCC 7585 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| ||||| || || | |||||||||||| Sbjct 7586 AGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 7645 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| |||||||| Sbjct 7646 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 7705 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| || ||||| || || || ||||| |||||| Sbjct 7706 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 7741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067630853012