Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq236 324 1e-83 seq246 239 4e-58 seq330 120 3e-22 seq301 96.9 3e-15 seq61 87.8 2e-12 >seq236 Length=53426 Score = 324 bits (358), Expect = 1e-83 Identities = 1135/1750 (65%), Gaps = 46/1750 (3%) Strand=Plus/Minus Query 22247 GACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTA-CGCAT 22305 ||||| |||||| || || || || ||||| || ||||| | | |||| | ||| Sbjct 6802 GACTGGGACTGATCAATGAAAGCACCACGATCAGCCGCCATCTGGA-CAATTTGGCGCTG 6744 Query 22306 CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGA-TCC 22364 || || ||||| ||||||||||| ||| | |||| ||| || || | | || | Sbjct 6743 AGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATATCTTCGGGGAT-GTTGGGAATGT 6685 Query 22365 TCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGA 22424 |||| | ||| ||||| | ||||| || || || | |||| ||| | || Sbjct 6684 TCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTTCATGGCATCGGACCAGAGGCCAG 6625 Query 22425 TGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGC 22484 || || || || |||| || |||| || || || |||||||||| | ||| | Sbjct 6624 TGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCGGCAAGGACAC 6565 Query 22485 GGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAG 22544 | || ||||| |||||||| ||| | || ||||| | || ||||| ||||| ||||| | Sbjct 6564 GTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGGG 6505 Query 22545 CGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGA 22602 || || || ||||| || || | || | ||| | | ||||||| |||| Sbjct 6504 ACGTACTGGCAGTTGGCATAGGGGCGAGGAGCAAGCTGTTGCGCGTACCGTGCTCCTTGA 6445 Query 22603 AATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACA 22661 | | ||| |||||| ||| |||||||| || || || | |||| |||||| Sbjct 6444 ---TCTGCTCCTTGAGCGAGTCCCACTCCCACAGGTCAGAGGGTTTGACAT---CCCACA 6391 Query 22662 TATCGTATTGCAACACGCCG-CGACTCGCCGG-GCTGCCTTCGTACGTTTCGTACGGACC 22719 | ||| |||| | | ||| || | || || | | |||| | | | |||||| ||||| Sbjct 6390 TGTCGAATTGGAGGATGCCCTCGGAT-GCAGGTGATCCCTT-GAATGATTCGTAGGGACC 6333 Query 22720 ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGAT 22779 | | | ||| | || ||||| | || | | || || ||||| ||||| Sbjct 6332 CTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGAT 6273 Query 22780 TTTCTTGTTCAATT--CG-GCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAA 22836 | |||||||| | || || ||| || || | | ||||| |||| | ||| Sbjct 6272 CTGCTTGTTCAGCTGACGAGCCTCGG-GAGACT--CAAAGGGCATGCGCAGGGCAAGGAA 6216 Query 22837 CGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTT 22896 ||||| || | |||||| || || | || || ||||||| || ||| || | Sbjct 6215 AGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCGGTGGCGCATATTG----CTGT 6160 Query 22897 TGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCA 22952 ||| ||| | | ||| || || ||| || | |||| | ||| | | | Sbjct 6159 TGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTTGTTGAGGTTGCGGACAA 6100 Query 22953 CAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC--CGATTGTA--CAACA 23008 | | || || | | |||||| || ||| || ||||| | ||| Sbjct 6099 CCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGCAGCCTTCG-TTGTAATCGACA 6041 Query 23009 AACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTAC 23068 | || ||| | ||||| | ||||| || || ||||| ||| | |||| Sbjct 6040 TAAGCAGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTAC 5981 Query 23069 TCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTT 23128 || | ||| ||||| || || ||| | || || |||| || |||||||||| Sbjct 5980 TCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTC 5921 Query 23129 TTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCG 23188 || || ||||| | |||||||||||||||| | || | || |||||| ||| | || Sbjct 5920 TTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCC 5861 Query 23189 ATGATCGCTCGCCACATAGTCTGAGCGTGAACA--CGT-CG--CACGTACCTGCCTTCTT 23243 | ||| | ||||| |||||||| ||| | | | || ||||| ||| ||| Sbjct 5860 AGGATGGAATACCACAGCTTCTGAGCGCGAATAGTCTTGCGACCACGTCCCTCCCT---- 5805 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 |||||| || | ||||| || || || || | || || ||||| |||||||| || Sbjct 5804 -CTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGC 5746 Query 23304 ATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 ||| | || |||||||| |||| ||| || ||||| || |||| || |||| Sbjct 5745 ATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGAT 5686 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 | || ||||| ||||| ||||| ||||| ||||| ||||| || |||||| ||||| Sbjct 5685 CGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCT 5626 Query 23424 TTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 | | ||| | || || || ||||| || ||||| ||||||||||| | |||||| | Sbjct 5625 TGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGG 5566 Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 | || || | ||| || || ||||| || || || | ||| ||||||||| | |||| | Sbjct 5565 CACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAA 5506 Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTC 23603 |||| || | | |||||| || | ||| ||| || | || || | || | Sbjct 5505 GCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC 5446 Query 23604 GAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTT 23663 | | | || |||| || || || || || || || || ||||| || ||| | Sbjct 5445 GGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCT 5386 Query 23664 TCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAG 23723 |||||||||| ||||| ||||||||||| || || || | |||||||||| || || | Sbjct 5385 TCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGG 5326 Query 23724 ACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATC 23783 ||| || |||| || ||| | || |||||| || || ||| || || ||| | Sbjct 5325 ACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACT 5266 Query 23784 CATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGA 23843 | ||||| || ||||| || || | | | |||||||| ||||| || || | Sbjct 5265 TGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATGCCAA 5206 Query 23844 TGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACA 23903 | || ||||| ||||||| || || | ||| || | ||| | || || | | Sbjct 5205 CAGACACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAA 5146 Query 23904 GATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCA 23963 | |||||||| | || || || || || || || | ||||| ||||| ||||||| | Sbjct 5145 GGTATGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGA 5086 Query 23964 CTATGGCCGA 23973 | ||||| || Sbjct 5085 CAATGGCGGA 5076 >seq246 Length=51316 Score = 239 bits (264), Expect = 4e-58 Identities = 497/730 (68%), Gaps = 19/730 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||||||||| ||||| || || ||||||| |||||| | || ||| Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATC-TGA-GAGAAAT--TTTATTAA 57685 || ||||||||| ||||||| || || | |||| ||| ||||| | || || Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGCCT-GAATGATGACGAGAAGTACTTCATCTC 23680 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | |||| || || ||||| || ||||| ||||| |||||||| ||||||| | Sbjct 23679 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 23620 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 || || || || | | ||||| ||||||| ||||| || || | || Sbjct 23619 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 23560 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || ||| | || || || | || || || |||||||| || ||| | ||||| ||| Sbjct 23559 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGAACAG 23500 Query 57866 CGAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGG 57921 | || || || || |||||||| || || || || || || |||| ||||||| Sbjct 23499 CCAG---CGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGC-AAGAAGG 23444 Query 57922 CAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 | || ||| | ||||| ||||| | | | | | || ||| || | || | | Sbjct 23443 CCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTG 23384 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || |||||||| ||||| ||||| || |||||| | || || ||| | | Sbjct 23383 CCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 23324 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| || || || ||||| || ||||| ||| ||||||| | || || || ||||||| Sbjct 23323 AGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGG 23264 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CGACGC 58158 |||| || ||||| ||||| ||||| || |||||||| |||| || | | | Sbjct 23263 GTCTGCACACTGACTTTGCCTGCCTGCTGCACTCTCAC---CTCAAGAACCGTGCTAGCA 23207 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 ||| ||| ||||| ||||| || || ||| || || | ||||| | |||| Sbjct 23206 AGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGACCG 23147 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 | || || || ||| |||| || |||||| | ||||| |||||||||||| Sbjct 23146 AGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGT 23087 Query 58279 TTGTTGCCGA 58288 |||||||||| Sbjct 23086 TTGTTGCCGA 23077 >seq330 Length=39978 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||||||||| ||||| || |||||| |||| || ||| | ||| Sbjct 14968 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACAATCACCCTCGAGGTGGAATCTTCC 14909 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 14908 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 14849 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || || ||||| || ||| |||||||| | || ||||||| || ||| Sbjct 14848 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCTTGAGCGACTACAAC 14789 Query 31373 ATTCAAAAAGA 31383 || || || || Sbjct 14788 ATCCAGAAGGA 14778 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || ||||| | || |||||| | || Sbjct 15196 ATGCAGATCTTCGTCAAGACGTTGACCGGCAAGACCATCACATTGGAGGTTGAATCATCA 15137 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | |||||| || ||| | ||||||||| || | || || || || Sbjct 15136 GACACCATCGACAATGTCAAATCAAAGATTCA-GGACAAGGAGGGTATTCCCCCGGATCA 15078 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || ||| | || ||||||| || || Sbjct 15077 GCAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACCTTGAGCGACTACAA 15018 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || || || Sbjct 15017 CATCCAGAAGGAGAGCACACTTCACCTTGTCCT 14985 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 15711 CATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCTTC 15652 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | || || | || ||| ||||||||| | || || ||||| Sbjct 15651 CGATACCATCGACAATGTGAAGTCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCA 15592 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| || | || || ||| || ||| || || Sbjct 15591 GCAGCGTCTGATTTTCGCTGGCAAGCAACTCGAGGATGGCCGAACTCTGTCCGACTACAA 15532 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 15531 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 15499 >seq301 Length=43884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 7737 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 7678 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 7677 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 7618 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || ||| |||| || ||| | ||| || Sbjct 7617 CAGCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGAACTCTCTCCGACTAC 7558 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| || || || || || || || ||||| || | ||| | || ||| Sbjct 7557 AACATCCAGAAGGAGTCTACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 7507 >seq61 Length=119690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 || || |||||||| ||||| | || ||||| || |||||| || | || ||| | ||| Sbjct 2758 ATACAGATTTTCGTCAAGACCTTCACCGGCAAGACAATCACCCTCAAGGTGGAATCTTCC 2817 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||| || ||| | | || |||||| Sbjct 2818 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAAGAGGGCATTCGCCCTGACCAG 2877 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || | |||||| || ||| |||||||| | || ||||||| || ||| Sbjct 2878 CAGCGCTTGATCTACGCTGGTAAGCAGCTGGAAGACAGTCACACCTTGAGCGACTACAAC 2937 Query 31373 ATTCAAAA 31380 || || || Sbjct 2938 ATCCAGAA 2945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757640690240