Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq246 152 1e-31
seq236 120 6e-22
>seq246
Length=51316
Score = 152 bits (168), Expect = 1e-31
Identities = 300/440 (68%), Gaps = 9/440 (2%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||||||||| || || || |||||||| || ||||| || || ||||| ||||||
Sbjct 23387 GTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 23328
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | |||
Sbjct 23327 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 23268
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094
|| ||||| || |||||||| ||| ||||| | | || |||
Sbjct 23267 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGTG 23213
Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154
| | |||| || ||| | ||| || ||||||| || ||||||||||| || || ||
Sbjct 23212 CTAGCAAG-GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTC 23154
Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214
| || | | || || | | || ||||||| ||| |||||| ||||||
Sbjct 23153 TTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTAC 23094
Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274
||||| ||||| || ||| || | || | | || || ||| ||| || |
Sbjct 23093 ATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCT 23034
Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334
|||||||||| |||||||| || ||||| |||| ||||||||||| || ||
Sbjct 23033 GCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAG 22974
Query 102335 AAGAGAGTCGCCGAGTATCA 102354
||| | |||||||| || ||
Sbjct 22973 AAGCGCGTCGCCGACTACCA 22954
>seq236
Length=53426
Score = 120 bits (132), Expect = 6e-22
Identities = 414/641 (65%), Gaps = 10/641 (2%)
Strand=Plus/Minus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
||| |||||||| ||||| |||| ||||| ||||||| | ||| | |||||||||||
Sbjct 5804 CTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCA 5745
Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---ACTCTCTCCATGAAGA 94522
|||| ||||||||| || | ||| | || || |||| || | || ||||||||
Sbjct 5744 TTCGTTGGGGCACATGAGCGTCCAGT----CCAAGTTCTTCTCAACACGCTTCATGAAGA 5689
Query 94523 GATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCAT 94582
|||| | | ||||| ||| |||| | || | | | | ||||| || ||| |
Sbjct 5688 GATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGT 5629
Query 94583 TCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTG 94642
|||| | | |||| || || ||||| |||||| | ||||||||
Sbjct 5628 TCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAA 5569
Query 94643 CAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTT 94702
|| || | ||||| || |||||| ||| | | | ||| | ||| |||| |
Sbjct 5568 AGGCACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTC 5509
Query 94703 GGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGAC-GAAATGGGGCTTCCTTTT 94761
| || | | || | ||| |||||| | || | | |||| || |
Sbjct 5508 GAAGCATGGGAATAATACCGTTAGAGGTACCGTTGG-TGCCAGCAATGTAAGAGCCGGTG 5450
Query 94762 GCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCC 94821
|| | | ||| | || | ||||| || ||||| ||||||| || || ||
Sbjct 5449 GCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACAT 5390
Query 94822 TCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCAC 94881
||| ||||| ||||| |||||||| |||||||| || | | | | | | ||||||
Sbjct 5389 GTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCAT 5330
Query 94882 GAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAA 94941
||||| || |||| | || || || ||||| ||||| || ||||| || ||
Sbjct 5329 GAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAG 5270
Query 94942 TAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATG 95001
| | || |||||||| | ||||| || | |||| | ||||| ||| |||
Sbjct 5269 AACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG 5210
Query 95002 CCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042
|| |||| ||| ||||||||||||| ||| || ||||||||
Sbjct 5209 CCAACAGACACTCGCATAATCATGTGCTGGGGCCGCTCAAC 5169
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989564068541260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |