Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq246 152 1e-31 seq236 120 6e-22 >seq246 Length=51316 Score = 152 bits (168), Expect = 1e-31 Identities = 300/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || || || |||||||| || ||||| || || ||||| |||||| Sbjct 23387 GTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGG 23328 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| |||| ||||| ||| |||| ||| | ||| Sbjct 23327 CTCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 23268 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || |||||||| ||| ||||| | | || ||| Sbjct 23267 GAGGGTCTGCACACTGACTTTGCCTGCCTGCTG----CACTCTCACCTCAAGA-ACCGTG 23213 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 | | |||| || ||| | ||| || ||||||| || ||||||||||| || || || Sbjct 23212 CTAGCAAG-GAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTC 23154 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | || || | | || ||||||| ||| |||||| |||||| Sbjct 23153 TTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTAC 23094 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 ||||| ||||| || ||| || | || | | || || ||| ||| || | Sbjct 23093 ATTGAGTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCT 23034 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||||||||| |||||||| || ||||| |||| ||||||||||| || || Sbjct 23033 GCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAG 22974 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | |||||||| || || Sbjct 22973 AAGCGCGTCGCCGACTACCA 22954 >seq236 Length=53426 Score = 120 bits (132), Expect = 6e-22 Identities = 414/641 (65%), Gaps = 10/641 (2%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| |||||||| ||||| |||| ||||| ||||||| | ||| | ||||||||||| Sbjct 5804 CTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCA 5745 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC-CTTC---ACTCTCTCCATGAAGA 94522 |||| ||||||||| || | ||| | || || |||| || | || |||||||| Sbjct 5744 TTCGTTGGGGCACATGAGCGTCCAGT----CCAAGTTCTTCTCAACACGCTTCATGAAGA 5689 Query 94523 GATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAATCTTCATTACCGGCAT 94582 |||| | | ||||| ||| |||| | || | | | | ||||| || ||| | Sbjct 5688 GATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGT 5629 Query 94583 TCTTTCTGCAGTCAATAAAGTCCTTCACGTCCAGATGCCAATCAGAAATATAGATGGCTG 94642 |||| | | |||| || || ||||| |||||| | |||||||| Sbjct 5628 TCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAA 5569 Query 94643 CAGCTCCTCTCCTCTTGTCTCCTCCCTGGCTAACCTTTTTCACAGAGACGTTAAAGATTT 94702 || || | ||||| || |||||| ||| | | | ||| | ||| |||| | Sbjct 5568 AGGCACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTC 5509 Query 94703 GGAGGAACGCCATGAGACCAGGGTGGGTACCACTCCATGAC-GAAATGGGGCTTCCTTTT 94761 | || | | || | ||| |||||| | || | | |||| || | Sbjct 5508 GAAGCATGGGAATAATACCGTTAGAGGTACCGTTGG-TGCCAGCAATGTAAGAGCCGGTG 5450 Query 94762 GCCCTCAAATCATGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCC 94821 || | | ||| | || | ||||| || ||||| ||||||| || || || Sbjct 5449 GCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCATCTTGGAAATCATGGCACAT 5390 Query 94822 TCCTTAAGAGTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCAC 94881 ||| ||||| ||||| |||||||| |||||||| || | | | | | | |||||| Sbjct 5389 GTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCAT 5330 Query 94882 GAGGAAAGTTGGGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAA 94941 ||||| || |||| | || || || ||||| ||||| || ||||| || || Sbjct 5329 GAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAG 5270 Query 94942 TAGTGCCTCGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATG 95001 | | || |||||||| | ||||| || | |||| | ||||| ||| ||| Sbjct 5269 AACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG 5210 Query 95002 CCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCAAC 95042 || |||| ||| ||||||||||||| ||| || |||||||| Sbjct 5209 CCAACAGACACTCGCATAATCATGTGCTGGGGCCGCTCAAC 5169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989564068541260