Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq246 165 1e-35
seq236 122 1e-22
>seq246
Length=51316
Score = 165 bits (182), Expect = 1e-35
Identities = 363/543 (67%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655
||||||||||||||| | | || | ||||| ||||| || || || ||||| || ||
Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315
Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715
||||| || ||||| || ||||| || || | ||| |||||||| || || || ||
Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375
Query 33716 AGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 33772
||||||||||| || | || || || | |||| || |||||||| ||
Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435
Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832
||| ||||||||||| | ||||| || || || ||||| || ||||| ||| |
Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495
Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892
| | | || || | || || ||||| | || || | || || || |||||
Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555
Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952
|| || ||||| || |||||||| |||| |||||||| ||||| || || |
Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615
Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012
|| || || | | || || || || || |||||| ||| ||||| || |||| |
Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675
Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 34069
|| || || || || ||||| | | | ||||||||||| | | ||| ||
Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735
Query 34070 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 34129
|| | ||| | ||||| | ||||| || || || || |||||||| ||||| | |||
Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795
Query 34130 GAT 34132
|||
Sbjct 23796 GAT 23798
>seq236
Length=53426
Score = 122 bits (134), Expect = 1e-22
Identities = 447/696 (64%), Gaps = 12/696 (2%)
Strand=Plus/Minus
Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280
||| ||||| | || ||||| | || ||| || || | || || || ||||| ||
Sbjct 5750 AGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAA 5691
Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340
|||||| |||||||| ||||| | || | || | | | || || || ||
Sbjct 5690 GAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTG 5631
Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400
||||| ||||| |||||| | | | || | ||||| || || | ||| |||||
Sbjct 5630 GTTCTTGCGGAGATCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGC 5571
Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460
| | ||||| || ||||| || ||||| || | ||||| || ||||| || | ||
Sbjct 5570 AAAGGCACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGAC 5511
Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520
|| | ||| |||||||||||||| || |||| ||||| || | || || || |
Sbjct 5510 TCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGT 5451
Query 63521 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
|||||| || | | || | || || || || || ||||| || || || | ||
Sbjct 5450 GGCACGGATGCGATGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCA 5393
Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
||| || | ||||||||||| || || |||||||| || |||||| | | ||
Sbjct 5392 CATGTCTTCAGAGTGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAG 5333
Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
|| |||| ||| | | || || || || || | ||| ||||| || || ||
Sbjct 5332 CATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTG 5273
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTG 63754
|| | || ||| | || ||||| ||||| | | || || || || |
Sbjct 5272 AAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAG 5213
Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814
||| || || | || ||||| | ||||||||| || | |||||||| ||| |
Sbjct 5212 ATG----CCAACAGACACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATC 5157
Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
| |||| | ||| || |||| ||| || || || || || | ||| |||||
Sbjct 5156 AAGCTTCAGAAGGTATGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 5097
Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
||| ||||| | ||| | || | ||||| |||||
Sbjct 5096 TCGATCGTAGACAATGGCGGAGTCGAGCTCCTCCTT 5061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629805224084160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |