Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq246 138 1e-27 seq236 122 1e-22 >seq246 Length=51316 Score = 138 bits (152), Expect = 1e-27 Identities = 357/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||| | | || | ||||||||||| || || || ||||| || || Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 36348 |||||||||| || | || || || | |||| || |||||||| || Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 ||| ||||||||||| | ||||| || ||||| || || || ||||| ||| | Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495 Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | | | || || | || || || || | || || | || || || ||||| Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528 || || || || || |||||||| |||| |||||||| ||||| || || | Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615 Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588 || || || | | || || || || || || ||| ||| ||||| || |||| | Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675 Query 36589 ATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 36645 || || || || || |||| | | | ||||||||||| | | ||| || Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735 Query 36646 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 36705 || | ||| | ||||| | ||||| || || || || |||||||| ||||| | ||| Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795 Query 36706 GAT 36708 ||| Sbjct 23796 GAT 23798 >seq236 Length=53426 Score = 122 bits (134), Expect = 1e-22 Identities = 620/975 (64%), Gaps = 24/975 (2%) Strand=Plus/Minus Query 65741 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 65800 ||| |||| || ||||| || ||||||| | | | || | || ||||| ||||| Sbjct 6023 AGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCA 5964 Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860 || || | ||||||||| | || | || || ||||| ||| || ||||| Sbjct 5963 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATC 5904 Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920 ||| || || ||||| || ||||||| || |||| | ||| | || | | ||| | Sbjct 5903 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACA- 5845 Query 65921 GACTC-GAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGTATAGTGTATACA 65976 | || |||| || || ||| | | | | ||| | |||||| ||||| Sbjct 5844 GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACA 5788 Query 65977 ATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAATCCAGGACATTCATCCGGACACAT 66034 | |||||||| ||| ||| | || | ||| ||||| ||||| | || ||||| Sbjct 5787 AAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACAT 5730 Query 66035 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 66094 | || ||| || || | || || || ||||| |||||||| |||||||| ||||| Sbjct 5729 GAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 5670 Query 66095 TATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 66154 | || || || | | | || || || || ||||| ||||| ||||| Sbjct 5669 AAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAA 5610 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 | | | | || ||||| || || | ||| ||||| | | ||||| || ||||| Sbjct 5609 CTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTT 5550 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 || ||||| || | ||||| || ||||| || | |||| | ||| ||||||||||| Sbjct 5549 ACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACC 5490 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--TT 66332 || || ||||| ||||| || | || || || | ||||| || | | || Sbjct 5489 GTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTT 5430 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 66392 | || || || || || ||||| || || || | || ||| || | || |||||| Sbjct 5429 CA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAG 5372 Query 66393 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 66452 || ||||| || ||||| ||| |||||| | | || || |||| ||| | Sbjct 5371 ATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGC 5312 Query 66453 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 66512 || || || || || | ||| ||||| || || || || | || ||| | || Sbjct 5311 GGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGG 5252 Query 66513 TTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACG 66568 ||||| ||||| | | || || || || |||| || || | || || Sbjct 5251 TTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG----CCAACAGACACTCG 5196 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628 ||| | ||||||||| || | ||||| |||||| | | |||| | ||| || Sbjct 5195 CATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGAACG 5136 Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 66688 |||| ||| || || || || || | ||| |||||||| ||||| | ||| | || Sbjct 5135 CTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGA 5076 Query 66689 GTTGAGTTTATCCTT 66703 || ||| | ||||| Sbjct 5075 GTCGAGCTCCTCCTT 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159866904480