Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq246 109 4e-19 >seq246 Length=51316 Score = 109 bits (120), Expect = 4e-19 Identities = 274/414 (66%), Gaps = 8/414 (2%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || || || || | || || | ||||| |||| |||||||| Sbjct 23384 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTC 23325 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||| || |||||||| || || | |||||||||||| | || |||||||| Sbjct 23324 AAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 23265 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929 ||||| ||| ||||||||| || ||||| | | | ||| ||||||| || Sbjct 23264 GGTCTGCACACTGACTTTGCCTGCCTGCTG--CACTCTCACCTCAA--GAACCGTGCTAG 23209 Query 22930 GACGATGCACATC----AAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCA 22985 | | | ||| | ||||| ||||||| || |||||| || ||||| Sbjct 23208 CAAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149 Query 22986 AGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACA 23045 ||||| || |||| ||||| ||||| || |||| | |||||| | Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 23089 Query 23046 GTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAA 23105 ||||||||| ||||| ||||| | || || || | | ||||| || || |||||| Sbjct 23088 GTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGCCAA 23029 Query 23106 TCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 || ||||| |||||||| |||||| | | || || || |||||||| || Sbjct 23028 CCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGA 22975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356226775009516