Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq246 109 4e-19
>seq246
Length=51316
Score = 109 bits (120), Expect = 4e-19
Identities = 274/414 (66%), Gaps = 8/414 (2%)
Strand=Plus/Minus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
|||||||| || || || || || | || || | ||||| |||| ||||||||
Sbjct 23384 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTC 23325
Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869
||||| || |||||||| || || | |||||||||||| | || ||||||||
Sbjct 23324 AAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 23265
Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929
||||| ||| ||||||||| || ||||| | | | ||| ||||||| ||
Sbjct 23264 GGTCTGCACACTGACTTTGCCTGCCTGCTG--CACTCTCACCTCAA--GAACCGTGCTAG 23209
Query 22930 GACGATGCACATC----AAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCA 22985
| | | ||| | ||||| ||||||| || |||||| || |||||
Sbjct 23208 CAAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149
Query 22986 AGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACA 23045
||||| || |||| ||||| ||||| || |||| | |||||| |
Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 23089
Query 23046 GTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCAA 23105
||||||||| ||||| ||||| | || || || | | ||||| || || ||||||
Sbjct 23088 GTTTGTTGCCGATCGTCTGCTTGTCGCTCTAGGCAACGAGAAGATCTACAAGTCTGCCAA 23029
Query 23106 TCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159
|| ||||| |||||||| |||||| | | || || || |||||||| ||
Sbjct 23028 CCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGA 22975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356226775009516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |