Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq330 118 1e-21 seq61 96.9 3e-15 seq301 82.4 8e-11 >seq330 Length=39978 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||||| || ||||| | || ||| || || ||||| || ||| Sbjct 14739 TGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCG 14798 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| |||| |||||| ||||| ||||||||| |||||| || ||||| || ||| Sbjct 14799 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 14858 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | || | || | | || | ||||||| | || Sbjct 14859 GGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 14917 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| | ||| | ||||||||||||| || || ||||| || |||||| Sbjct 14918 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCATA 14969 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || ||||| || ||||||| |||| ||| || ||||| || |||||| | Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||| ||||| |||||||| || || || || || ||||| ||| | |||| ||| | Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGATTTGACAT 15123 Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || | ||||| | | || ||||| | || | ||||||||||||||||| || | Sbjct 15124 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 15183 Query 139752 CGAATATTTGCATA 139765 |||| || |||||| Sbjct 15184 CGAAGATCTGCATA 15197 >seq61 Length=119690 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTT--GAATGTTATAATCGCTCATTGTGCTCGAGT 139610 |||| ||| ||||||| ||||| || | ||||| || ||||||| ||| || Sbjct 2971 AAAAAAAAGAGAATCGTGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGT 2912 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| ||||| |||||||| ||||||| || ||||| || || | ||||| ||||||| Sbjct 2911 CTTCCAGCTGCTTACCAGCGTAGATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGT 2852 Query 139671 CGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 | ||| | || | || | | || | ||||||| | ||||||| | ||| | Sbjct 2851 CC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATT 2793 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||| || || || ||||| || || ||| Sbjct 2792 GTCTTGCCGGTGAAGGTCTTGACGAAAATCTGTATA 2757 >seq301 Length=43884 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | |||||||| || || ||||| || ||| | || | Sbjct 7520 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCA 7579 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| |||||||| |||||| || ||||| || || || ||||| || ||| Sbjct 7580 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 7639 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | | Sbjct 7640 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 7699 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 7700 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496054252342400