Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq330 118 1e-21
seq61 96.9 3e-15
seq301 82.4 8e-11
>seq330
Length=39978
Score = 118 bits (130), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||||| || ||||| | || ||| || || ||||| || |||
Sbjct 14739 TGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCG 14798
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|||| |||| |||||| ||||| ||||||||| |||||| || ||||| || |||
Sbjct 14799 CTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGA 14858
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTC 139713
|| ||||| || ||||| ||| | || | || | | || | ||||||| | ||
Sbjct 14859 GGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTC 14917
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||| | ||| | ||||||||||||| || || ||||| || ||||||
Sbjct 14918 CACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCATA 14969
Score = 104 bits (114), Expect = 2e-17
Identities = 141/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632
||| || || ||||| || ||||||| |||| ||| || ||||| || |||||| |
Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064
Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692
||| ||||| |||||||| || || || || || ||||| ||| | |||| ||| |
Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC-TGAATCTTTGATTTGACAT 15123
Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751
| || | ||||| | | || ||||| | || | ||||||||||||||||| || |
Sbjct 15124 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 15183
Query 139752 CGAATATTTGCATA 139765
|||| || ||||||
Sbjct 15184 CGAAGATCTGCATA 15197
>seq61
Length=119690
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTT--GAATGTTATAATCGCTCATTGTGCTCGAGT 139610
|||| ||| ||||||| ||||| || | ||||| || ||||||| ||| ||
Sbjct 2971 AAAAAAAAGAGAATCGTGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGT 2912
Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670
|||| ||||| |||||||| ||||||| || ||||| || || | ||||| |||||||
Sbjct 2911 CTTCCAGCTGCTTACCAGCGTAGATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGT 2852
Query 139671 CGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
| ||| | || | || | | || | ||||||| | ||||||| | ||| |
Sbjct 2851 CC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATT 2793
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||||||||| || || || ||||| || || |||
Sbjct 2792 GTCTTGCCGGTGAAGGTCTTGACGAAAATCTGTATA 2757
>seq301
Length=43884
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | |||||||| || || ||||| || ||| | || |
Sbjct 7520 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCA 7579
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| |||||||| |||||| || ||||| || || || ||||| || |||
Sbjct 7580 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 7639
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||||| ||| | |
Sbjct 7640 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 7699
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | || || ||||| || |||||
Sbjct 7700 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496054252342400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |