Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq246 159 5e-34
seq236 140 5e-28
>seq246
Length=51316
Score = 159 bits (176), Expect = 5e-34
Identities = 362/543 (67%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033
||||||||||||||| | | || || ||||||||||| || || || ||||| || ||
Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315
Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGC 50093
||||| || ||||| || ||||| ||||| | || |||||||| || || || ||
Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375
Query 50094 GGCAAAGGCAACAAGTCTCTCTCCA---TAACTGGCGCTGTCATGTATCCACTTTTGAGC 50150
||||||||||| || | || || || | |||| || |||||||| ||
Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435
Query 50151 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 50210
||| ||||||||||| | ||||| || || || ||||| || ||||| ||| |
Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495
Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270
| | | || || | || || ||||| | || || | || || || |||||
Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555
Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330
|| || ||||| || |||||||| |||| |||||||| ||||| || || |
Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615
Query 50331 AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 50390
|| || || | | || || || || || || ||| ||| ||||| || |||| |
Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675
Query 50391 ATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGATATCTTT 50447
|| || || | || |||| | | | ||||||||||| | | ||| ||
Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735
Query 50448 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 50507
|| | ||| | ||||| | ||||| || || || || |||||||| ||||| | |||
Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795
Query 50508 GAT 50510
|||
Sbjct 23796 GAT 23798
>seq236
Length=53426
Score = 140 bits (154), Expect = 5e-28
Identities = 624/975 (64%), Gaps = 24/975 (2%)
Strand=Plus/Minus
Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCA 79679
||| |||| || ||||| || ||||||| | | | || | || || || |||||
Sbjct 6023 AGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCA 5964
Query 79680 GAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 79739
|||||| | |||||||| | || | || || ||||| ||| || |||||
Sbjct 5963 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATC 5904
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||| || || ||||| || ||||||| || |||| | ||| | || | | ||| |
Sbjct 5903 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACA- 5845
Query 79800 GACTC-GAGCCTTTATTATAGACTTGT-ATCTCTTTTCTC--TTTCGTATTGTGTATATA 79855
| || |||| || || |||| | | | | ||| | ||||||| ||| |
Sbjct 5844 GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACA 5788
Query 79856 ATCGTTCGAACTCGTCTCCCCAAA-CA-TCGTCTAATCCAGGACATTCGTCAGGACACAT 79913
| |||||||| ||| ||| | || || | | ||||| ||||||| || |||||
Sbjct 5787 AAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACAT 5730
Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973
| || ||| || | | || || || ||||| |||||||| |||||||| |||||
Sbjct 5729 GAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 5670
Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033
| || | || | | | ||| || || || ||||| ||||| |||||
Sbjct 5669 AAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAA 5610
Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093
| | | | || | ||||| || || | ||| ||||| | | || || || |||||
Sbjct 5609 CTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTT 5550
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|| ||||| || | ||||| || ||||| || | |||| | ||| |||||||||||
Sbjct 5549 ACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACC 5490
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TT 80211
|| || ||||| ||||| || | || || || ||||||| || | | ||
Sbjct 5489 GTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTT 5430
Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271
| || || || || || ||||| || || || | || ||| || | || ||||||
Sbjct 5429 CA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAG 5372
Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 80331
|| ||||| |||||||| || |||||| | | || || |||| ||| |
Sbjct 5371 ATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGC 5312
Query 80332 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 80391
|| || || || || | ||| ||||| || || || || | || ||||| ||
Sbjct 5311 GGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGG 5252
Query 80392 TTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACACG 80447
||||| ||||| | | || || || || |||| || || | || ||
Sbjct 5251 TTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG----CCAACAGACACTCG 5196
Query 80448 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTT 80507
||| | ||||||||| || | ||||| |||||| || | |||| | ||| ||
Sbjct 5195 CATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGAACG 5136
Query 80508 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 80567
|||| ||| || || || || || | ||| |||||||| ||||| | ||| | ||
Sbjct 5135 CTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGA 5076
Query 80568 GTTGAGTTTATCCTT 80582
|| ||| | |||||
Sbjct 5075 GTCGAGCTCCTCCTT 5061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718254686018080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |