Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq246 147 3e-30 seq236 116 5e-21 >seq246 Length=51316 Score = 147 bits (162), Expect = 3e-30 Identities = 359/543 (66%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||||||||| || | | || | ||||||||||| || || || ||||| || || Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 42255 |||||||||| || | || || || | |||| || |||||||| || Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| ||||||||||| | ||||| || || || ||||| || ||||| ||| | Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | | | || || | || || ||||| | || || | || || || ||||| Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || || ||||| || |||||||| |||| ||||||| | ||| || || | Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615 Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495 || || || | | || ||||| || || || ||| ||| ||||| || |||| | Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675 Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCTTT 42552 || || || || || ||||| | | ||||||||||| | | ||| || Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735 Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612 || | ||| | ||||| | ||||| || || ||||| |||||||| ||||| | ||| Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795 Query 42613 GAT 42615 ||| Sbjct 23796 GAT 23798 >seq236 Length=53426 Score = 116 bits (128), Expect = 5e-21 Identities = 625/983 (64%), Gaps = 28/983 (3%) Strand=Plus/Minus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756 ||| | ||| |||| || ||||| || ||||||| | | | || | ||||| || Sbjct 6029 GGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTC 5970 Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816 ||||| || || | ||||||||| | || | || || ||||| ||| || Sbjct 5969 GGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 5910 Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 |||||||| || || || || || ||||||| || |||| | ||| | || | | Sbjct 5909 GGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATA 5850 Query 71877 CCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTC--TTTCGTATTGTG 71932 ||| | | || |||| || | ||||| | | | | ||| | ||||||| Sbjct 5849 CCACA-GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCT 5794 Query 71933 TATATAATCGTTCGAACTCGTCTCCCCA-AGCATTGT-CTAATCCAGGACATTCATTCGG 71990 ||| || |||||||| ||| ||| |||| | | | ||||| ||||| || || Sbjct 5793 CATACAAAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGG 5736 Query 71991 ACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATC 72048 ||||| | | ||| || || || | | || || ||||| |||||||| |||||| Sbjct 5735 GCACATGAGCGTCCAGTC--CAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATC 5678 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || ||||| | || | || | | | ||| || || || ||||| ||| Sbjct 5677 CAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGA 5618 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 || |||||| | | | || | ||||| || || | ||| ||||| | | || || Sbjct 5617 TCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGA 5558 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || ||||| || ||||| || | ||||| || ||||| || | |||| | ||| ||| Sbjct 5557 CGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGA 5498 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 72286 |||||||| || || | ||| ||||| || | || || || ||||||| || Sbjct 5497 ATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGA 5438 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || || | || || || || || ||||| || || || | || ||| || | | Sbjct 5437 TGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAG 5380 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 | |||||||| ||||| || ||||| ||| |||||| | | || || |||| | Sbjct 5379 TGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT 5320 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 || | || || || || || | ||| ||||| || || || || | || || Sbjct 5319 GGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAG 5260 Query 72467 ACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGTATTCCTACC 72522 ||| || ||||| ||||| | | || || || || |||| || || Sbjct 5259 ACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG----CCAACA 5204 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 | || ||||| | ||| ||||| || | ||||| |||||| || | |||| | | Sbjct 5203 GACACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGG 5144 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || |||| ||| || || || || || | ||| |||||||| ||||| | | Sbjct 5143 TATGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACA 5084 Query 72643 ATAACCGAATTGAGTTTATCCTT 72665 || | || | ||| | ||||| Sbjct 5083 ATGGCGGAGTCGAGCTCCTCCTT 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671126012114720