Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq246 147 3e-30
seq236 116 5e-21
>seq246
Length=51316
Score = 147 bits (162), Expect = 3e-30
Identities = 359/543 (66%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
|||||||||||| || | | || | ||||||||||| || || || ||||| || ||
Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
||||| || ||||| || || || ||||| | || |||||||| || || || ||
Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGTATCCACTTTTGAGC 42255
|||||||||| || | || || || | |||| || |||||||| ||
Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435
Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315
||| ||||||||||| | ||||| || || || ||||| || ||||| ||| |
Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495
Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375
| | | || || | || || ||||| | || || | || || || |||||
Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555
Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435
|| || ||||| || |||||||| |||| ||||||| | ||| || || |
Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615
Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495
|| || || | | || ||||| || || || ||| ||| ||||| || |||| |
Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675
Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCTTT 42552
|| || || || || ||||| | | ||||||||||| | | ||| ||
Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735
Query 42553 AGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCA 42612
|| | ||| | ||||| | ||||| || || ||||| |||||||| ||||| | |||
Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795
Query 42613 GAT 42615
|||
Sbjct 23796 GAT 23798
>seq236
Length=53426
Score = 116 bits (128), Expect = 5e-21
Identities = 625/983 (64%), Gaps = 28/983 (3%)
Strand=Plus/Minus
Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTC 71756
||| | ||| |||| || ||||| || ||||||| | | | || | ||||| ||
Sbjct 6029 GGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTC 5970
Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816
||||| || || | ||||||||| | || | || || ||||| ||| ||
Sbjct 5969 GGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 5910
Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876
|||||||| || || || || || ||||||| || |||| | ||| | || | |
Sbjct 5909 GGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATA 5850
Query 71877 CCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTC--TTTCGTATTGTG 71932
||| | | || |||| || | ||||| | | | | ||| | |||||||
Sbjct 5849 CCACA-GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCT 5794
Query 71933 TATATAATCGTTCGAACTCGTCTCCCCA-AGCATTGT-CTAATCCAGGACATTCATTCGG 71990
||| || |||||||| ||| ||| |||| | | | ||||| ||||| || ||
Sbjct 5793 CATACAAAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGG 5736
Query 71991 ACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATC 72048
||||| | | ||| || || || | | || || ||||| |||||||| ||||||
Sbjct 5735 GCACATGAGCGTCCAGTC--CAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATC 5678
Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108
|| ||||| | || | || | | | ||| || || || ||||| |||
Sbjct 5677 CAGAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGA 5618
Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168
|| |||||| | | | || | ||||| || || | ||| ||||| | | || ||
Sbjct 5617 TCAAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGA 5558
Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228
|| ||||| || ||||| || | ||||| || ||||| || | |||| | ||| |||
Sbjct 5557 CGCTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGA 5498
Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--AT 72286
|||||||| || || | ||| ||||| || | || || || ||||||| ||
Sbjct 5497 ATAATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGA 5438
Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346
|| || | || || || || || ||||| || || || | || ||| || | |
Sbjct 5437 TGGACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAG 5380
Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406
| |||||||| ||||| || ||||| ||| |||||| | | || || |||| |
Sbjct 5379 TGTCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT 5320
Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466
|| | || || || || || | ||| ||||| || || || || | || ||
Sbjct 5319 GGGCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAG 5260
Query 72467 ACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGTATTCCTACC 72522
||| || ||||| ||||| | | || || || || |||| || ||
Sbjct 5259 ACATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG----CCAACA 5204
Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582
| || ||||| | ||| ||||| || | ||||| |||||| || | |||| | |
Sbjct 5203 GACACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGG 5144
Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642
|| || |||| ||| || || || || || | ||| |||||||| ||||| | |
Sbjct 5143 TATGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACA 5084
Query 72643 ATAACCGAATTGAGTTTATCCTT 72665
|| | || | ||| | |||||
Sbjct 5083 ATGGCGGAGTCGAGCTCCTCCTT 5061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671126012114720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |