Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq246 293 3e-74
seq236 163 4e-35
>seq246
Length=51316
Score = 293 bits (324), Expect = 3e-74
Identities = 583/851 (69%), Gaps = 37/851 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||||||||| | |||||||| ||||| | ||||||| | ||||||
Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134
|||||||| ||| |||||||| | | || ||| ||| ||| ||||| || ||
Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGCCTGAATGA---TGA-CGAGAAGTACTTCAT 23683
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| |
Sbjct 23682 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 23623
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | || || |||| ||| ||||| ||||| ||||| ||||
Sbjct 23622 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCA 23564
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT--TCGCGA 125311
|||| |||||| | ||||| || | ||||| || || |||| ||||| | ||
Sbjct 23563 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 23504
Query 125312 TCCG-CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
| | || || | || ||||| ||||| || || || | || | || || || |
Sbjct 23503 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 23447
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
|||| | |||| || ||||||| | ||| | || ||||| | ||| | | ||||
Sbjct 23446 AGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 23387
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || || ||||| ||||| |||||||| ||| ||||| ||||||| ||||
Sbjct 23386 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 23327
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||||| || |||||||| || ||||| |||||| | || ||||| ||||
Sbjct 23326 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 23267
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610
|||| || ||| |||||||||| || ||| ||| | | | | || |
Sbjct 23266 AGGGTCTGCACACTGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 23216
Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667
| | ||| | | |||| ||| |||| | || ||||| || | || || || |
Sbjct 23215 GTGCTAGCAAGG---AGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGG 23159
Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727
|||| | ||||| | || || | | || |||||||||||| ||| || |||
Sbjct 23158 AGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGC 23099
Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784
||||||| |||||||| || |||||||| || || | ||| || ||||| |
Sbjct 23098 AGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCG---CTCTAGGCAACGAGAAGATCT 23042
Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844
|||| | || |||||||| |||||| | ||| || || | || ||||||||||
Sbjct 23041 ACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACT 22982
Query 125845 TTTTCGAGAAG 125855
| |||||||||
Sbjct 22981 TCTTCGAGAAG 22971
>seq236
Length=53426
Score = 163 bits (180), Expect = 4e-35
Identities = 332/486 (68%), Gaps = 8/486 (2%)
Strand=Plus/Plus
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
|||| ||| ||||| || || || || || || || | ||| ||||| | || ||||
Sbjct 5530 GATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 5589
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||||| ||||| ||||| || | || | ||||| ||| ||| ||||||| |
Sbjct 5590 GGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 5649
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042
| || | |||||||| ||| |||||| | || ||| | ||||||||||| || |
Sbjct 5650 GCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGA 5709
Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102
|| ||| |||||| || ||||||||| || | || || ||| | || ||||
Sbjct 5710 AGAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTGGCTGACTGCTA 5767
Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161
||||| ||||| ||||| ||| | |||||| ||||| || || ||||
Sbjct 5768 TGGCGAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTGGTCGCAAGAC 5827
Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220
| ||| || | |||| |||||| | ||||| || || ||| |||||||| |
Sbjct 5828 TATTCG-CGCTC-AGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTAAC 5885
Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280
|| | ||| |||||||||||| || || ||||| |||||||| || |||| |||
Sbjct 5886 CCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 5945
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340
||| ||||||| || ||||| || ||| | |||||| |||| || ||| ||
Sbjct 5946 ATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTTGCT 6005
Query 97341 GTTTGC 97346
||||||
Sbjct 6006 GTTTGC 6011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741044638186720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |