Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq246 293 3e-74 seq236 163 4e-35 >seq246 Length=51316 Score = 293 bits (324), Expect = 3e-74 Identities = 583/851 (69%), Gaps = 37/851 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| | |||||||| ||||| | ||||||| | |||||| Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 |||||||| ||| |||||||| | | || ||| ||| ||| ||||| || || Sbjct 23738 TCCAAGGATCTGCACGATTGGAATAACCGCCTGAATGA---TGA-CGAGAAGTACTTCAT 23683 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| ||||||||||||||| ||| ||||| || |||||||| || ||| | Sbjct 23682 CTCTCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGA 23623 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||| ||||| ||||| |||| Sbjct 23622 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGG-CTCGATGCTTCTACGGCTTCCAGATCA 23564 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT--TCGCGA 125311 |||| |||||| | ||||| || | ||||| || || |||| ||||| | || Sbjct 23563 TGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATCGACACCTACATCAAGGAGA 23504 Query 125312 TCCG-CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 | | || || | || ||||| ||||| || || || | || | || || || | Sbjct 23503 ACAGCCAGCGCAGCTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 23447 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| || ||||||| | ||| | || ||||| | ||| | | |||| Sbjct 23446 AGGCCGACTGGGCCATCAAGTGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGCCTGG 23387 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||| ||||| |||||||| ||| ||||| ||||||| |||| Sbjct 23386 TTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGC 23327 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || |||||||| || ||||| |||||| | || ||||| |||| Sbjct 23326 TCAAGAAGCGAGGTCTCATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 23267 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA 125610 |||| || ||| |||||||||| || ||| ||| | | | | || | Sbjct 23266 AGGGTCTGCACACTGACTTTGCCTGCCTGCTG------CACTCT---CACCTCAAGAACC 23216 Query 125611 GATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | | ||| | | |||| ||| |||| | || ||||| || | || || || | Sbjct 23215 GTGCTAGCAAGG---AGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGG 23159 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| | ||||| | || || | | || |||||||||||| ||| || ||| Sbjct 23158 AGTTCTTGACCGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGC 23099 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 ||||||| |||||||| || |||||||| || || | ||| || ||||| | Sbjct 23098 AGTACATTGAGTTTGTTGCCGATCGTCTGCTTGTCG---CTCTAGGCAACGAGAAGATCT 23042 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| | || |||||||| |||||| | ||| || || | || |||||||||| Sbjct 23041 ACAAGTCTGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACT 22982 Query 125845 TTTTCGAGAAG 125855 | ||||||||| Sbjct 22981 TCTTCGAGAAG 22971 >seq236 Length=53426 Score = 163 bits (180), Expect = 4e-35 Identities = 332/486 (68%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||| ||| ||||| || || || || || || || | ||| ||||| | || |||| Sbjct 5530 GATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCTT 5589 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||||| ||||| ||||| || | || | ||||| ||| ||| ||||||| | Sbjct 5590 GGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAGAACCACGGCAAGGAAGAGGTCC 5649 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--CAA 97042 | || | |||||||| ||| |||||| | || ||| | ||||||||||| || | Sbjct 5650 GCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCCGATCTCTTCATGAAGCGTGTTGAGA 5709 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 || ||| |||||| || ||||||||| || | || || ||| | || |||| Sbjct 5710 AGAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGCCTGGCTGACTGCTA 5767 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGAC 97161 ||||| ||||| ||||| ||| | |||||| ||||| || || |||| Sbjct 5768 TGGCGAGGAGTTCGAGGCTTTGTATGAGAAATACGAGAGGGAGGGACGTGGTCGCAAGAC 5827 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| || | |||| |||||| | ||||| || || ||| |||||||| | Sbjct 5828 TATTCG-CGCTC-AGAAGCTGTGGTATTCCATCCTGGAAGCCCAGACCGAGACTGGTAAC 5885 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| |||||||||||| || || ||||| |||||||| || |||| ||| Sbjct 5886 CCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACC 5945 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 ||| ||||||| || ||||| || ||| | |||||| |||| || ||| || Sbjct 5946 ATCCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTGTGCTCCAGATGAGGTTGCT 6005 Query 97341 GTTTGC 97346 |||||| Sbjct 6006 GTTTGC 6011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044638186720