Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq363 89.7 3e-13 >seq363 Length=36312 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 ||| || || | ||||| | ||| ||||| ||||| || | || | ||| || | ||| Sbjct 13370 GGGGAACGGCCGAGGCTCACGCTCCAGCTGCGTCTTGAGAGCGTCGATGTGGTCGATGTA 13429 Query 25448 GACGTGAGCGTCTCCCA-GA-GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505 |||||| |||||||||| || ||| || | || ||| || | || || |||| | Sbjct 13430 GACGTGTGCGTCTCCCATGACGTG-GGTGAGGCT-TCCGGGCACCAGATCGCACACGTGA 13487 Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || | ||||| ||||| || |||||||||||||| ||||| | |||| |||||| Sbjct 13488 GCGAGCATGTGTGTGAGCAGCGCATAGCTGGCGATGTTGAAGGGGATGCCGAGGCCCATG 13547 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACA 25592 | | | |||| |||||| ||||| || Sbjct 13548 T-CGCAGGACCGCTGGTATAGCTGGCA 13573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340131083388756