Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq330 105 6e-18
seq301 93.3 4e-14
seq61 82.4 6e-11
>seq330
Length=39978
Score = 105 bits (116), Expect = 6e-18
Identities = 151/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || || |||||||||||||| || |||||||| || ||| || |||| |||
Sbjct 14760 ACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCC 14819
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
||||||||||| | | || || |||||||| || || | | ||||||||| |
Sbjct 14820 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 14879
Query 48638 ATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
|| || ||||| | | || ||||| |||| ||| ||| ||||| || || || |
Sbjct 14880 ATCTTGGACTTGACGTTGTCG--ATGGTGTCGGAAGATTCCACCTCGAGGGTGATTGTCT 14937
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| ||||| || || |||||||||||
Sbjct 14938 TGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||||||||||||||| || |||||||| || ||| || ||||||| ||||||
Sbjct 14994 TGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGC 15053
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | | || | ||||||||||||| || | || ||||||||| ||| ||
Sbjct 15054 TTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTT 15113
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
|||| | | ||||| || | || || ||| | ||| ||||| || |||||
Sbjct 15114 GATTTGACATTGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTC 15173
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
| || || || || ||||||||
Sbjct 15174 AACGTCTTGACGAAGATCTGCAT 15196
>seq301
Length=43884
Score = 93.3 bits (102), Expect = 4e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || | | ||| | ||||||||||||||||| || |
Sbjct 7543 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAA 7602
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| || |||||||| ||| || | | ||||||||| || || ||||| |
Sbjct 7603 GATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 7662
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| ||||| |||| ||||||| ||| | || || || || || ||||| || || ||
Sbjct 7663 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 7722
Query 48715 AAAAATCTGCATCGTGTCT 48733
|||||||||||| || ||
Sbjct 7723 GAAAATCTGCATCTTGCCT 7741
>seq61
Length=119690
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/202 (70%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 48528 GTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAAT-TGTCGCTCGTCCTCCAGCTGCTTA 48586
||||||||| ||| || |||||||| || ||| ||| || ||| ||||||||||||
Sbjct 2956 GTGTGCTCTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACT-GTCTTCCAGCTGCTTA 2898
Query 48587 CCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGC 48646
|| |||| || || |||||||| || | | | || |||||| ||| || |
Sbjct 2897 CCAGCGTAGATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGAC 2838
Query 48647 TTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGA 48704
|||| | | || ||||| |||| ||| ||| || || || || || || |||||||
Sbjct 2837 TTGACGTTGTCG--ATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGA 2780
Query 48705 GAGTTTTCACAAAAATCTGCAT 48726
|| || || |||||||| ||
Sbjct 2779 AGGTCTTGACGAAAATCTGTAT 2758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421243129353572
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |