Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq301 86.0 6e-12 seq330 84.2 2e-11 >seq301 Length=43884 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||| | ||||| ||||| || | ||| || ||| | ||| | | Sbjct 7520 CGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCA 7579 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| |||| ||||| || || ||||| || || ||| Sbjct 7580 TCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 7639 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || |||| ||||| Sbjct 7640 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATC 7699 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || || |||||||| Sbjct 7700 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734 >seq330 Length=39978 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || ||||||| ||| ||||| ||||| || || ||||| Sbjct 15006 TCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAG 15065 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | |||||||| || |||||||| || ||||| | ||| |||| ||||| | Sbjct 15066 ATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTTGATTTGACATTG 15125 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| | || || || | |||||||| || || || | || || || Sbjct 15126 TCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACG 15185 Query 94997 AAGATCTGCAT 95007 ||||||||||| Sbjct 15186 AAGATCTGCAT 15196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282391077920