Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq246 168 8e-37
seq236 132 6e-26
>seq246
Length=51316
Score = 168 bits (186), Expect = 8e-37
Identities = 364/543 (67%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377
||||||||||||||| | | || || ||||||||||| || || || ||||| || ||
Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315
Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437
||||| || ||||| || ||||| || || | || |||||||| || || || ||
Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375
Query 33438 AGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 33494
||||||||||| || | || || || | |||| || |||||||| ||
Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435
Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554
||| ||||||||||| | ||||| || || || ||||| || ||||| ||| |
Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495
Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614
| | | || || | || || ||||| | || || | || || || |||||
Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555
Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674
|| || ||||| || |||||||| |||| |||||||| ||||| || || |
Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615
Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734
|| || || ||| || || || || || || ||| ||| ||||| || |||| |
Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675
Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 33791
|| || || || || ||||| | | | ||||||||||| | | ||| ||
Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735
Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851
|| | ||| | ||||| | ||||| || || || || |||||||| ||||| | |||
Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795
Query 33852 GAT 33854
|||
Sbjct 23796 GAT 23798
>seq236
Length=53426
Score = 132 bits (146), Expect = 6e-26
Identities = 625/981 (64%), Gaps = 24/981 (2%)
Strand=Plus/Minus
Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950
||| | ||| |||| || ||||| || ||||||| | | | || | || |||||
Sbjct 6029 GGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTC 5970
Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010
||||| || || | ||| ||||| | || | || || ||||| ||| ||
Sbjct 5969 GGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 5910
Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070
|||||||| || || ||||| || ||||||| || |||| | ||| | || | |
Sbjct 5909 GGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATA 5850
Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT---TCTCTTTCGTATAGTG 63126
||| | | || |||| || || ||| | | | || || ||||||
Sbjct 5849 CCACA-GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCT 5794
Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAATCCAGGACATTCATCCGG 63184
|||||| |||||||| ||| ||| | || | ||| ||||| ||||| | ||
Sbjct 5793 CATACAAAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGG 5736
Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63244
||||| | || ||| || || | || || || ||||| |||||||| ||||||||
Sbjct 5735 GCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCA 5676
Query 63245 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63304
||||| | || | || | | | || || || || ||||| |||||
Sbjct 5675 GAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATC 5616
Query 63305 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364
|||||| | | | || | ||||| || || | ||| ||||| | | ||||| ||
Sbjct 5615 AAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACG 5556
Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424
||||| || ||||| || | ||||| || ||||| || | |||| | ||| |||||
Sbjct 5555 CTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAAT 5496
Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484
||||||||| || |||| ||||| || | || || || ||||||| || |
Sbjct 5495 AATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATG 5436
Query 63485 AA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542
| || | || || || || || ||||| || || || | || ||| || | |||
Sbjct 5435 GACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTG 5378
Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602
|||||||||||||| |||||||| || |||||| | | || || |||| |||
Sbjct 5377 TCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGG 5318
Query 63603 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63662
| || || || || || | ||| ||||| || || || || | || |||
Sbjct 5317 GCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGAC 5258
Query 63663 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 63718
| || ||||| ||||| | | || || || || |||| || || |
Sbjct 5257 ATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG----CCAACAGA 5202
Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778
|| ||||| | ||||||||| || | ||||| |||||| | | |||| | |||
Sbjct 5201 CACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTA 5142
Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
|| |||| ||| || || || || || | ||| |||||||| ||||| | |||
Sbjct 5141 TGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAAT 5082
Query 63839 AACCGAGTTGAGTTTATCCTT 63859
| |||| ||| | |||||
Sbjct 5081 GGCGGAGTCGAGCTCCTCCTT 5061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622934959087520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |