Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq246 168 8e-37 seq236 132 6e-26 >seq246 Length=51316 Score = 168 bits (186), Expect = 8e-37 Identities = 364/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||||||||||||| | | || || ||||||||||| || || || ||||| || || Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || ||||| || ||||| || || | || |||||||| || || || || Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 33494 ||||||||||| || | || || || | |||| || |||||||| || Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| ||||||||||| | ||||| || || || ||||| || ||||| ||| | Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | | | || || | || || ||||| | || || | || || || ||||| Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || || ||||| || |||||||| |||| |||||||| ||||| || || | Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 || || || ||| || || || || || || ||| ||| ||||| || |||| | Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 33791 || || || || || ||||| | | | ||||||||||| | | ||| || Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735 Query 33792 AGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 || | ||| | ||||| | ||||| || || || || |||||||| ||||| | ||| Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795 Query 33852 GAT 33854 ||| Sbjct 23796 GAT 23798 >seq236 Length=53426 Score = 132 bits (146), Expect = 6e-26 Identities = 625/981 (64%), Gaps = 24/981 (2%) Strand=Plus/Minus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||| | ||| |||| || ||||| || ||||||| | | | || | || ||||| Sbjct 6029 GGCCAAAGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTC 5970 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 ||||| || || | ||| ||||| | || | || || ||||| ||| || Sbjct 5969 GGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCA 5910 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||||| || || ||||| || ||||||| || |||| | ||| | || | | Sbjct 5909 GGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATA 5850 Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT---TCTCTTTCGTATAGTG 63126 ||| | | || |||| || || ||| | | | || || |||||| Sbjct 5849 CCACA-GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCT 5794 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAATCCAGGACATTCATCCGG 63184 |||||| |||||||| ||| ||| | || | ||| ||||| ||||| | || Sbjct 5793 CATACAAAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGG 5736 Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63244 ||||| | || ||| || || | || || || ||||| |||||||| |||||||| Sbjct 5735 GCACATGAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCA 5676 Query 63245 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63304 ||||| | || | || | | | || || || || ||||| ||||| Sbjct 5675 GAGAGCAAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATC 5616 Query 63305 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 |||||| | | | || | ||||| || || | ||| ||||| | | ||||| || Sbjct 5615 AAGGAACTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACG 5556 Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424 ||||| || ||||| || | ||||| || ||||| || | |||| | ||| ||||| Sbjct 5555 CTTGTTACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAAT 5496 Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484 ||||||||| || |||| ||||| || | || || || ||||||| || | Sbjct 5495 AATACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATG 5436 Query 63485 AA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542 | || | || || || || || ||||| || || || | || ||| || | ||| Sbjct 5435 GACGTTCA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTG 5378 Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602 |||||||||||||| |||||||| || |||||| | | || || |||| ||| Sbjct 5377 TCATAGATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGG 5318 Query 63603 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63662 | || || || || || | ||| ||||| || || || || | || ||| Sbjct 5317 GCTTGCGGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGAC 5258 Query 63663 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 63718 | || ||||| ||||| | | || || || || |||| || || | Sbjct 5257 ATGAGGTTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG----CCAACAGA 5202 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTA 63778 || ||||| | ||||||||| || | ||||| |||||| | | |||| | ||| Sbjct 5201 CACTCGCATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTA 5142 Query 63779 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 || |||| ||| || || || || || | ||| |||||||| ||||| | ||| Sbjct 5141 TGAACGCTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAAT 5082 Query 63839 AACCGAGTTGAGTTTATCCTT 63859 | |||| ||| | ||||| Sbjct 5081 GGCGGAGTCGAGCTCCTCCTT 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934959087520