Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq236 363 4e-95 >seq236 Length=53426 Score = 363 bits (402), Expect = 4e-95 Identities = 1077/1637 (66%), Gaps = 48/1637 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTC-GTAATCCACAGATGTCTTC 363605 ||||| || ||| | || || ||| ||| || || || | | || || ||| |||| || Sbjct 5271 TTCACTCATGCCTCTCCCACCCTGTTCAACGCAGGTACCCCGCAAGCC-CAGCTGTCCTC 5329 Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||| | | | |||||||||||| |||||||||||||| |||||| || |||| Sbjct 5330 ATGCTTCTTGGTCGACATGAAGGACGATAGCATCGAGGGTATCTATGACACTCTGAAGAC 5389 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTG 363724 ||||| | |||||||||| || || || || || | | || |||| | |||| Sbjct 5390 ATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCATCGCATCCGTG 5448 Query 363725 C-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | || | | ||||||| ||||| || ||| || || | ||||||||||| Sbjct 5449 CCACCGG-CTCTTACATTGCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTT 5507 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| || || || ||||||||||| ||||| || || Sbjct 5508 CGAGTCTTCAACAACACTGCCAGATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCC 5567 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || || ||||||||| || ||||| | |||||||| ||||| ||||| || Sbjct 5568 TTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAG 5627 Query 363904 AAC-ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 ||| |||| || |||||| | || || || || ||||| ||| || ||| || | Sbjct 5628 AACCACGGCAAGGAAGAGG---TCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCC 5684 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAA--GAATTGGTCACTCTTTTGCCCACACG 364018 || | || |||||||| || ||| | | | | | ||| | ||| | ||||| ||| Sbjct 5685 GATCTCTTCATGAAGCGTGTTGAG--AAGAACTTGGACTGGACGCTCATGTGCCCCAACG 5742 Query 364019 AATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 |||| || || || | || || ||||| | | || | | ||| | || || || || Sbjct 5743 AATGCCCTGGCCTGGCTGACTGCTATGGCGAG--GAGTTCGAGGCTTTGTATGAGAAATA 5800 Query 364077 TGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 || ||||||| | ||| ||||| |||| ||| |||||||| |||| | ||||| | Sbjct 5801 CGAGAGGGAGGGACGTGGTCGCAAGACTATTCGCGCTCAGAAGCTGTGGTATTCCATCCT 5860 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 ||| | |||| ||||| || | |||| ||| | ||||| ||| | ||||||||||| Sbjct 5861 GGAAGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAA 5920 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTG 364255 | ||||||| || |||| || || | || |||| |||||| || ||||||||||| | Sbjct 5921 GAGCAACCAGAAGAACCTGGGAACCA-TCCGCAGCTCCAACCTCTGCACCGAGATTATCG 5979 Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT 364315 | ||| ||||| || ||| ||| || || ||| | || || | || || || || | Sbjct 5980 AGTACTGTGCTCCAGATGAGGTTGCTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTT 6039 Query 364316 TTGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG 364369 ||| || || || | |||| || | ||| |||| || ||| | | Sbjct 6040 ATGTCGATTACAACGAAGGCTGCTATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGG 6099 Query 364370 CTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC 364429 | |||| ||| ||||| | || || || | || || | | || ||| Sbjct 6100 TTGTCCGCAACCTCAACAAGATCATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCA 6159 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 |||||||| || || || ||||| ||||||| ||||| || || |||| ||| Sbjct 6160 ACAGCAATATGCGCCACCGACCCATTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCC 6219 Query 364490 TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549 | || ||| | ||||| || || || |||||| || || ||| ||||||||| Sbjct 6220 TTGCCCTGCGCATGCCCTTTGAGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTG 6279 Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGG-GAAAG 364608 | || || || ||| || | ||||| | ||| | |||||| | | | Sbjct 6280 AGACCATCTACCATGCGGCCCTTGAGGCTTC------TATGGAGATCGCCAAGGTGGAGG 6333 Query 364609 TACTCTACTTAT-----GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | |||| || |||| || ||| || |||| | |||| || || | | Sbjct 6334 GTCCCTACGAATCATTCAAGGGATCACCTGCATCCGAGGGCATCCTCCAATTCGACATGT 6393 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAG 364722 || |||||| || |||| || ||| | ||||| |||| | | | | | ||| || Sbjct 6394 GGGATGTCAAACCCTCTGACCTGTGGGAGTGGGACTCGCTCAAGGAGC-AGATCAAGGAG 6452 Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782 || ||||| |||||| | | | || || ||||| || || ||| | ||||| Sbjct 6453 CACGGTACGCGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATT 6512 Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842 || || ||||||||||||||||| || | || ||| | || || || || ||| Sbjct 6513 CTGGGTAACAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTT 6572 Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902 |||| || || | ||| || || | || ||||||| || |||| || || Sbjct 6573 GCCGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTC 6632 Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962 ||| || |||||||||| |||||| || | || || || | ||||||||||| Sbjct 6633 TGGTCCGATGCCATGAAGAACCGTATCATTGCTGAGAACGGCTCCATTCAGAACATTCCC 6692 Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCG---A 365019 | || |||||| | ||| | ||||||| ||||| ||||| ||||| ||| | Sbjct 6693 AACATCCCCGAAGATATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGCCAA 6752 Query 365020 ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAAC 365079 | | || | |||||||| ||||| |||||||| || |||| |||||| | ||| Sbjct 6753 ATTGTC---CAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAAC 6809 Query 365080 GTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 | ||||| | || || | |||| |||| |||||| ||| || ||||| Sbjct 6810 ATCCACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAG 6869 Query 365140 TCCGGTCTTAAGACAGG 365156 ||||| ||||| || Sbjct 6870 CTTGGTCTCAAGACCGG 6886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303327348829304