Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq236 363 4e-95
>seq236
Length=53426
Score = 363 bits (402), Expect = 4e-95
Identities = 1077/1637 (66%), Gaps = 48/1637 (3%)
Strand=Plus/Plus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTC-GTAATCCACAGATGTCTTC 363605
||||| || ||| | || || ||| ||| || || || | | || || ||| |||| ||
Sbjct 5271 TTCACTCATGCCTCTCCCACCCTGTTCAACGCAGGTACCCCGCAAGCC-CAGCTGTCCTC 5329
Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665
||||| | | | |||||||||||| |||||||||||||| |||||| || ||||
Sbjct 5330 ATGCTTCTTGGTCGACATGAAGGACGATAGCATCGAGGGTATCTATGACACTCTGAAGAC 5389
Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTG 363724
||||| | |||||||||| || || || || || | | || |||| | ||||
Sbjct 5390 ATGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGCTTGAACG-TCCATCGCATCCGTG 5448
Query 363725 C-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783
| || | | ||||||| ||||| || ||| || || | |||||||||||
Sbjct 5449 CCACCGG-CTCTTACATTGCTGGCACCAACGGTACCTCTAACGGTATTATTCCCATGCTT 5507
Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843
|| || || |||| ||||| || || || ||||||||||| ||||| || ||
Sbjct 5508 CGAGTCTTCAACAACACTGCCAGATATGTTGACCAGGGTGGTAACAAGCGTCCTGGTGCC 5567
Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903
||||| || || ||||||||| || ||||| | |||||||| ||||| ||||| ||
Sbjct 5568 TTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTTGAGTTCCTTGATCTCCGCAAG 5627
Query 363904 AAC-ACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960
||| |||| || |||||| | || || || || ||||| ||| || ||| || |
Sbjct 5628 AACCACGGCAAGGAAGAGG---TCCGCGCTCGCGACTTGTTCCTTGCTCTCTGGATTCCC 5684
Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAA--GAATTGGTCACTCTTTTGCCCACACG 364018
|| | || |||||||| || ||| | | | | | ||| | ||| | ||||| |||
Sbjct 5685 GATCTCTTCATGAAGCGTGTTGAG--AAGAACTTGGACTGGACGCTCATGTGCCCCAACG 5742
Query 364019 AATGTCCAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076
|||| || || || | || || ||||| | | || | | ||| | || || || ||
Sbjct 5743 AATGCCCTGGCCTGGCTGACTGCTATGGCGAG--GAGTTCGAGGCTTTGTATGAGAAATA 5800
Query 364077 TGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136
|| ||||||| | ||| ||||| |||| ||| |||||||| |||| | ||||| |
Sbjct 5801 CGAGAGGGAGGGACGTGGTCGCAAGACTATTCGCGCTCAGAAGCTGTGGTATTCCATCCT 5860
Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196
||| | |||| ||||| || | |||| ||| | ||||| ||| | |||||||||||
Sbjct 5861 GGAAGCCCAGACCGAGACTGGTAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAA 5920
Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTG 364255
| ||||||| || |||| || || | || |||| |||||| || ||||||||||| |
Sbjct 5921 GAGCAACCAGAAGAACCTGGGAACCA-TCCGCAGCTCCAACCTCTGCACCGAGATTATCG 5979
Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT 364315
| ||| ||||| || ||| ||| || || ||| | || || | || || || || |
Sbjct 5980 AGTACTGTGCTCCAGATGAGGTTGCTGTTTGCAACTTGGCCTCTTTGGCCCTCCCTGCTT 6039
Query 364316 TTGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATG 364369
||| || || || | |||| || | ||| |||| || ||| | |
Sbjct 6040 ATGTCGATTACAACGAAGGCTGCTATGACTTTAAGAAGCTTCATGAAGTCACCAAGGTGG 6099
Query 364370 CTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC 364429
| |||| ||| ||||| | || || || | || || | | || |||
Sbjct 6100 TTGTCCGCAACCTCAACAAGATCATTGATGTCAACCACTACCCTGTCCAGGAGGCCCGCA 6159
Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489
|||||||| || || || ||||| ||||||| ||||| || || |||| |||
Sbjct 6160 ACAGCAATATGCGCCACCGACCCATTGGCGTTGGTGTCCAGGGTCTTGCCGACGCTTTCC 6219
Query 364490 TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549
| || ||| | ||||| || || || |||||| || || ||| |||||||||
Sbjct 6220 TTGCCCTGCGCATGCCCTTTGAGTCTCCCGAGGCTCGTCAGCTGAACAAGCAGATCTTTG 6279
Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGG-GAAAG 364608
| || || || ||| || | ||||| | ||| | |||||| | | |
Sbjct 6280 AGACCATCTACCATGCGGCCCTTGAGGCTTC------TATGGAGATCGCCAAGGTGGAGG 6333
Query 364609 TACTCTACTTAT-----GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663
| |||| || |||| || ||| || |||| | |||| || || | |
Sbjct 6334 GTCCCTACGAATCATTCAAGGGATCACCTGCATCCGAGGGCATCCTCCAATTCGACATGT 6393
Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAG 364722
|| |||||| || |||| || ||| | ||||| |||| | | | | | ||| ||
Sbjct 6394 GGGATGTCAAACCCTCTGACCTGTGGGAGTGGGACTCGCTCAAGGAGC-AGATCAAGGAG 6452
Query 364723 CATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATC 364782
|| ||||| |||||| | | | || || ||||| || || ||| | |||||
Sbjct 6453 CACGGTACGCGCAACAGCTTGCTCCTCGCCCCTATGCCAACTGCCAGTACGTCCCAGATT 6512
Query 364783 CTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTT 364842
|| || ||||||||||||||||| || | || ||| | || || || || |||
Sbjct 6513 CTGGGTAACAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTT 6572
Query 364843 TCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTG 364902
|||| || || | ||| || || | || ||||||| || |||| || ||
Sbjct 6573 GCCGGCGAGTTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACTGGCCTC 6632
Query 364903 TGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCA 364962
||| || |||||||||| |||||| || | || || || | |||||||||||
Sbjct 6633 TGGTCCGATGCCATGAAGAACCGTATCATTGCTGAGAACGGCTCCATTCAGAACATTCCC 6692
Query 364963 GGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCG---A 365019
| || |||||| | ||| | ||||||| ||||| ||||| ||||| ||| |
Sbjct 6693 AACATCCCCGAAGATATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAGCGCCAA 6752
Query 365020 ACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAAC 365079
| | || | |||||||| ||||| |||||||| || |||| |||||| | |||
Sbjct 6753 ATTGTC---CAGATGGCGGCTGATCGTGGTGCTTTCATTGATCAGTCCCAGTCCCTGAAC 6809
Query 365080 GTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139
| ||||| | || || | |||| |||| |||||| ||| || |||||
Sbjct 6810 ATCCACATGAAGGATCCCACAATGGGCAAGATTACCAGCATGCACTTCACTGGCTGGAAG 6869
Query 365140 TCCGGTCTTAAGACAGG 365156
||||| ||||| ||
Sbjct 6870 CTTGGTCTCAAGACCGG 6886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303327348829304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |