Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq236 170 2e-37 seq330 132 5e-26 seq301 113 4e-20 seq23 98.7 9e-16 seq61 95.1 1e-14 >seq236 Length=53426 Score = 170 bits (188), Expect = 2e-37 Identities = 918/1442 (64%), Gaps = 39/1442 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||||||||| | ||||| ||| || | ||| || ||| |||| Sbjct 6595 TTGACAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 6536 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || ||||||| || ||||| || || | || | || || ||||| || | Sbjct 6535 TCGAAGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGG 6476 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || |||||| ||||||| |||||| | ||||| |||| |||| ||||| Sbjct 6475 AGCAAGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCAC 6416 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGGCT 145296 || || || | || |||||||||||| | || | |||||||| | || || | | Sbjct 6415 AGGTCAGAGGGTTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAGGTGAT 6356 Query 145297 GCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGC 145356 ||||| || || ||| ||| ||||||| ||| | ||||| || || Sbjct 6355 CCCTTG-AATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCCTCAAGGGC 6297 Query 145357 GCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTA 145416 | || || ||||| || ||| |||| ||| | || || ||| | Sbjct 6296 CGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGACTCAAA 6237 Query 145417 CGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCG 145476 ||||||||||| | ||||| ||||| || ||||| | || ||||| ||||| || Sbjct 6236 GGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAATGGGTCG 6177 Query 145477 ATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTT 145536 || ||| ||||| | | ||| || || ||| || | || || || || || Sbjct 6176 GTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTTGACATCAATGATCTT 6117 Query 145537 ATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGC 145596 || | ||| || || || ||||| || | | | | ||| | ||||||| | | ||| Sbjct 6116 GTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTCATAGC-AGC 6058 Query 145597 C----TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCG 145652 | | || | ||| || | ||| | || ||| | || ||||| || ||||| || Sbjct 6057 CTTCGTTGTAATCGA-CATA-AGC-AGGGAGGGCCAAAGAGGCCAAGTTGCAAACAGCAA 6001 Query 145653 TCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTC 145712 ||| || | | | ||| | | ||||||| ||| | ||| | |||||||| Sbjct 6000 CCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTC 5941 Query 145713 CCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGC 145772 |||| || | ||| || || || | |||||| || ||||||||||||||| | || | Sbjct 5940 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTAC 5881 Query 145773 CAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCT 145832 ||||||| ||| | |||| ||| || || | ||| || || | || Sbjct 5880 CAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTGAGCGCGAATAGTCTTGC 5821 Query 145833 GGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAAT 145892 | || ||||| ||||||||| || | |||| ||| | || ||||| | Sbjct 5820 GACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAACTCCTCGCCATAGCAGT 5761 Query 145893 CGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGC 145952 | | |||||| || || | |||||| ||||| |||| ||| | ||| | || | Sbjct 5760 CAGCCAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTTCTCAACAC 5701 Query 145953 GCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCT 146012 ||| ||| || | ||| || | ||| || || | ||||||||| || || ||| Sbjct 5700 GCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAGTCGCGAGC---GCGGACCT 5644 Query 146013 CAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACGG 146067 | | || || ||| || | || ||| | ||| | ||| ||| |||||||| || Sbjct 5643 CTTCCTTGCCGTGGTTCTTGC-GGAGATCAAGGA-ACTCAAAGACGTCGGCGTGCCAAGG 5586 Query 146068 TTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTAC 146124 || | |||| ||| | ||| || || ||| ||||||||||| || | | | Sbjct 5585 CTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCAACATATCTGGC 5526 Query 146125 CATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT---AG- 146180 ||||||| ||||| || | |||||| | ||| | | ||||| || || Sbjct 5525 AGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGGTACCGTTGGTGCCAGC 5466 Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-GCCG 146239 | | || | |||| || || | || ||| || |||| ||||| ||| || ||| Sbjct 5465 AATGTA----AGAGCCGGTGGCACGGATGCGATGGACGTTCAAGCCGATACCACCAGCCA 5410 Query 146240 TACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG-- 146296 | |||||| || ||| || ||| | || || || ||||| || || ||||||||| Sbjct 5409 T-CTTGGAAATCATGGCACATGTCTTC-AGAGTGTCATAGATACCCTCGATGCTATCGTC 5352 Query 146297 CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAAC 146356 |||| ||| ||| || ||||| ||| ||| ||| || ||| || || || |||| Sbjct 5351 CTTC--ATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCTGCGTTGAAC 5294 Query 146357 AACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCG 146416 | || || || || || || | || | ||| | || || || | | Sbjct 5293 AGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTATGTCTCCAGGACA 5234 Query 146417 TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGC 146476 | ||||||||| || ||||| | || || ||||| | |||||| ||||||||| Sbjct 5233 CGCTCAATGTCGTCTCCCCAGATGCCAACAGACACTCGCATAATCATGTGCTGGGGCCGC 5174 Query 146477 TC 146478 || Sbjct 5173 TC 5172 >seq330 Length=39978 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||| || || || | || |||||| || |||||||| ||||| Sbjct 14741 GCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCT 14800 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || || |||| || ||||||||||| ||||| Sbjct 14801 CAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGAGG 14860 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || |||| || || | Sbjct 14861 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCAC 14920 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || ||||| ||||| || |||||||||||||| Sbjct 14921 CTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| | Sbjct 15484 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15543 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || |||||||| ||| | || | |||||||||||| ||||| Sbjct 15544 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 15603 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | || | ||||||| ||||||| Sbjct 15604 ATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 15663 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| || |||||| Sbjct 15664 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATG 15711 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| ||||||| |||||| |||||| ||||||||||| || | Sbjct 15005 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 15064 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCT 131161 ||| | ||||||||| ||||| || || || || ||||| ||| | | || |||| | Sbjct 15065 GATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTC-CTGAATCTTTGATTTGACAT 15123 Query 131162 GCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 || | || || | || || | || | || | ||| || ||||| | || || | Sbjct 15124 TGTCGATGGTGTCTGATGATTCAACCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGA 15183 Query 131222 CGAAAATCTGCAT 131234 |||| |||||||| Sbjct 15184 CGAAGATCTGCAT 15196 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| ||| Sbjct 15198 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 15257 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | ||||||||||| |||||| Sbjct 15258 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGG 15317 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | ||||| | ||||| | Sbjct 15318 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACC 15377 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| ||| | ||| || || || || || || |||| Sbjct 15378 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGA 15414 >seq301 Length=43884 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| |||| || |||||||||||||| || Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 7687 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 7688 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734 >seq23 Length=158060 Score = 98.7 bits (108), Expect = 9e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| ||||| ||||||||||| || ||| Sbjct 67394 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 67453 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 67454 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 67513 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 67514 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 67573 Query 131225 AA 131226 || Sbjct 67574 AA 67575 >seq61 Length=119690 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 || ||| || |||||||| ||||||| |||| | ||| || |||||||| || ||||| Sbjct 2949 CTTCTTCTGGATGTTGTAGTCGCTCAAGGTGTGACTGTCTTCCAGCTGCTTACCAGCGTA 2890 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| || ||||||||||| || | || || |||||||| || || ||||| | Sbjct 2889 GATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTGTCCTGAATCTTGGACTTGACGTT 2830 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | || |||| || || | | || ||| | || || ||||| | || || || Sbjct 2829 GTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATTGTCTTGCCGGTGAAGGTCTTGAC 2770 Query 131223 GAAAATCTGCAT 131234 ||||||||| || Sbjct 2769 GAAAATCTGTAT 2758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472003524948480