Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq330 96.9 3e-15 seq301 87.8 1e-12 >seq330 Length=39978 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 16702 CATTTAC---CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTT 16758 ||||||| || || || || | ||| |||| ||||| ||| |||||| || ||||| Sbjct 14732 CATTTACTGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTT 14791 Query 16759 GTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTG 16818 ||||||| || ||| |||| |||| || || || ||| | || | ||||| || Sbjct 14792 GTAGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTG 14851 Query 16819 GTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 ||| ||| | |||||| ||||| ||| | ||| || | | | | |||||| Sbjct 14852 GTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGA 14911 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||| || | |||||| || || |||||||| || ||||| ||||||||||| Sbjct 14912 AGATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || ||| | | ||| Sbjct 15499 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTTCGGCCATCC 15558 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| || |||| || ||||| ||||| ||| | ||| || || || Sbjct 15559 TCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 15618 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | |||||| | | | | || ||| | ||| || | ||||||||| Sbjct 15619 TGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACCTCGAGGGTGATGGTC 15678 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || ||||| || || ||||| Sbjct 15679 TTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710 >seq301 Length=43884 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || || |||||||| || ||||||||||||| Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||||| || || || || | || | ||||| |||||| || Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||| || | | | | |||||| | |||| Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 7687 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||| || || || || || || ||||| ||||||||||| ||| Sbjct 7688 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 7738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405080239020280