Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq546 96.9 2e-15 seq330 93.3 3e-14 >seq546 Length=20258 Score = 96.9 bits (106), Expect = 2e-15 Identities = 197/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || |||||||||||||| ||| |||| || ||||| | || || ||||| ||| Sbjct 4550 GATGCCTTCTACCGCTACAAGATGGAGCGCCTCCAGACCAAGATTGAAGGCAAGGGTAAC 4609 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || ||||| | |||||| || | ||||| || | || | ||||| | Sbjct 4610 GGTATCAAGACCGTTGTCGTCAACTTGTCCAGCGTCGCCCAGTCTCTTGCCCGCCCCGGT 4669 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | || | || || || || | ||| || || |||||||| | | || | ||| Sbjct 4670 TCTTATGTCATCAAGTACTTTGGTTTCGAGCTGGGAGCTCAGACCAACATCGACCCCAAG 4729 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| | || | | || |||||||||||| || || Sbjct 4730 GACGACCGTTGGATCATCAACGGCGCCCACGATGCCGCAAAGCTGCAGGACCACCTCGAT 4789 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || ||||||||| || || | ||| | ||||| |||||||| Sbjct 4790 GGCTTCATCAACAAGTTTGTTCTCTGCAAAAAGTGCAAGAACCCAGAGACCGA 4842 >seq330 Length=39978 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||||| ||||||||||| || || ||||| || Sbjct 14968 TACCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGC 15027 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | || || || ||||| || || || || ||||| | || Sbjct 15028 TCAAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGG 15087 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || |||||| ||| ||| || ||||| | || || ||| ||||| Sbjct 15088 GAATACCCTCCTTGTCCTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCAA 15147 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || || || || ||||| || || ||||| |||||||| Sbjct 15148 CCTCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940782830332