Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq246 147 3e-30
seq236 134 2e-26
>seq246
Length=51316
Score = 147 bits (162), Expect = 3e-30
Identities = 359/543 (66%), Gaps = 6/543 (1%)
Strand=Plus/Plus
Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734
||| ||||||||||| | | || | ||||||||||| || || || ||||| || ||
Sbjct 23256 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACC 23315
Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794
||||| || ||||| || ||||| ||||| | || ||||| || || || || ||
Sbjct 23316 TCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGC 23375
Query 32795 CGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGTATCCACTTTTGAGC 32851
|||||||||| || | || || || | |||| || |||||||| ||
Sbjct 23376 AGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCACTTGATGGC 23435
Query 32852 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 32911
||| ||||||||||| | ||||| || ||||| || || || ||||| ||| |
Sbjct 23436 CCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCG 23495
Query 32912 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971
| | | || || | || || || || | || || | || || || |||||
Sbjct 23496 CTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTT 23555
Query 32972 TTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACA 33031
|| || || || || ||||||||||||| |||||||| ||||| || || |
Sbjct 23556 CTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCGGGGATCTGGACCTCGCCGCT 23615
Query 33032 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33091
|| || || | | || || || || || || ||| ||| ||||| || |||| |
Sbjct 23616 GAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGAT 23675
Query 33092 ATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTTT 33148
|| || || || || ||||| | | | ||||||||||| | | ||| ||
Sbjct 23676 GTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTT 23735
Query 33149 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 33208
|| | ||| | ||||| | ||||| || || || || |||||||| ||||| | |||
Sbjct 23736 GGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATTTGCCA 23795
Query 33209 GAT 33211
|||
Sbjct 23796 GAT 23798
>seq236
Length=53426
Score = 134 bits (148), Expect = 2e-26
Identities = 623/975 (64%), Gaps = 24/975 (2%)
Strand=Plus/Minus
Query 62752 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62811
||| |||| || ||||| || ||||||| | | | || | || ||||| |||||
Sbjct 6023 AGAGGCCAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCA 5964
Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871
|| || | ||||||||| | || | || || ||||| ||| || |||||
Sbjct 5963 GAGGTTGGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATC 5904
Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931
||| || || ||||| || ||||||| || |||| | ||| | || | | ||| |
Sbjct 5903 CTTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACA- 5845
Query 62932 GACTC-GAGCCTTTATTATAGATTTGT-ATCTCTTTTCTC--TTTCGTATAGTGTATACA 62987
| || |||| || || ||| | | | | ||| | |||||| |||||
Sbjct 5844 GCTTCTGAGCGCGAAT---AGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACA 5788
Query 62988 ATCGTTCGAACTCGTCTCCCCAAA-CATTGT-CCAGTCCAGGACATTCATCCGGACACAT 63045
| |||||||| ||| ||| | || | |||| ||||| ||||| | || |||||
Sbjct 5787 AAGCCTCGAACTC--CTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTGGGGCACAT 5730
Query 63046 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63105
| || ||| || || | || || || ||||| |||||||| |||||||| |||||
Sbjct 5729 GAGCGTCCAGTCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGC 5670
Query 63106 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165
| || | || | | | || || || || ||||| ||||| |||||
Sbjct 5669 AAGGAACAAGTCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAA 5610
Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225
| | | | || | ||||| || || | ||| ||||| | | ||||| || |||||
Sbjct 5609 CTCAAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTT 5550
Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285
|| ||||| || | ||||| || ||||| || | |||| | ||| |||||||||||
Sbjct 5549 ACCACCCTGGTCAACATATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACC 5490
Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TT 63343
|| || ||||| ||||| || | || || || ||||||| || | | ||
Sbjct 5489 GTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCACGGATGCGATGGACGTT 5430
Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403
| || || || || || ||||| || || || | || ||| || | || ||||||
Sbjct 5429 CA-AG-CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAG 5372
Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463
|| ||||| || ||||| ||| |||||| | | || || |||| ||| |
Sbjct 5371 ATACCCTCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCTGGGCTTGC 5312
Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523
|| || || || || | ||| ||||| || ||||| || | || ||| | ||
Sbjct 5311 GGGGTACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAGAACTTGCTAGACATGAGG 5252
Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGACACG 63579
||||| ||||| | | || || || || |||| || || | || ||
Sbjct 5251 TTGTATGTCTCCAGGACACGCTCAATGTCGTCTCCCCAGATG----CCAACAGACACTCG 5196
Query 63580 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63639
||| | ||||||||| || | ||||| |||||| | | |||| | ||| ||
Sbjct 5195 CATAATCATGTGCTGGGGCCGCTCAACAATCTTGCCATCAAGCTTCAGAAGGTATGAACG 5136
Query 63640 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63699
|||| ||| || || || || || | ||| |||||||| ||||| | ||| | ||
Sbjct 5135 CTCCAGAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGATCGTAGACAATGGCGGA 5076
Query 63700 GTTGAGTTTATCCTT 63714
|| ||| | |||||
Sbjct 5075 GTCGAGCTCCTCCTT 5061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633619549131200
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