Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq246 206 3e-48
>seq246
Length=51316
Score = 206 bits (228), Expect = 3e-48
Identities = 387/563 (69%), Gaps = 13/563 (2%)
Strand=Plus/Plus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
||| |||||||| || || | ||| ||||| || || || | ||| ||| || || |
Sbjct 23241 GCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAG 23300
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| || | || ||||| ||||||||||| || || || ||||| ||| || ||
Sbjct 23301 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAA 23360
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-- 93268
||||| || ||||| ||||| || || | || | |||||| | || || ||
Sbjct 23361 GATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAA---GGAAGAGTTCTTGTC 23417
Query 93269 CT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327
|| |||||| || | ||||| ||||| || || ||| ||||| | || || || ||
Sbjct 23418 CTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGC 23477
Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAA 93385
||| || ||||| |||| | | |||| | ||||| || ||||| | ||| ||
Sbjct 23478 GTTGAAGAGGTAGCTGCGCTGG--CTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGAG 23535
Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445
|| | || || |||| |||||||| || ||||| |||||||| |||| ||| ||
Sbjct 23536 TAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGAGCCTCG 23595
Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505
| |||||| || || || | ||| || || || || ||||| || ||||| ||
Sbjct 23596 GGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAGAG 23655
Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTA 93562
|| ||||| || |||| || || || || | ||||| ||||| || | | |||
Sbjct 23656 GCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGTTA 23715
Query 93563 TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622
| ||||||| ||||| || || ||||| | |||||| | ||||| || || |||||
Sbjct 23716 TTCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTTCG 23775
Query 93623 GCTTTTTTGTACATATCCCATAT 93645
|| ||||||||||| | ||| ||
Sbjct 23776 GCCTTTTTGTACATTTGCCAGAT 23798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556849857685280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |