Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq48 120 6e-22
seq179 102 2e-16
seq246 98.7 2e-15
>seq48
Length=127510
Score = 120 bits (132), Expect = 6e-22
Identities = 434/671 (65%), Gaps = 15/671 (2%)
Strand=Plus/Minus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || ||||| || |||||||||||||||||||| ||||| | || ||||| | |
Sbjct 96668 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGTTGAAG 96609
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
||||||||||||| ||| | || || || || |||||| |||| |||||| | ||
Sbjct 96608 GGTGCCGATGTCCTCCTGTTGGACGAACCTACTAACCACTTGGATGTTACCAACATTGCT 96549
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCACG 279873
||||| | | |||||| | |||| | | || | | ||||| |||||||
Sbjct 96548 TGGCTGGAGAACTACCT--CAAGTCGCACCCCGACATTACCAGTTTGATTGTGTCTCACG 96491
Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933
||||||||||| | || ||| | | | ||| |||||||||| || |||||
Sbjct 96490 ACTCTGGCTTCTTGGACAACGTTACCACCGACATTTACCACTATGAGCCCAACAAGAAGC 96431
Query 279934 TCTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992
|| || || ||| || ||||| | || ||||| ||||| ||||| |
Sbjct 96430 TC-GCATGCTACAAGGGTAACCTTGCGGCGTTCGTCCAGCTTCGCCCCGAGGCCAAGAGC 96372
Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052
||||| ||| || ||| || | ||| | |||||| || || | ||
Sbjct 96371 TACTACACTCTGTCGGCATCCAACGTCCAGTTCAAGTTCCCTCCTCCTGGTATCCTCACT 96312
Query 280053 GGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCC 280112
|| |||| || || ||| || ||||| | | |||||| | | || |||
Sbjct 96311 GGTATCAAGTCTCAGACTCGTGCCATCATTCGCATGAGCAACGTCTCTTACACCTACCCC 96252
Query 280113 AATGGCCCCAA--CATC---TTCAGCAGTGTC-AACTCGCAGGTTTCTATGAACTCACGG 280166
|| | |||| |||| ||||| ||||| ||| | | || | ||| ||
Sbjct 96251 AAGGCTACCAAGCCATCGCTTTCAGACGTGTCTTGCTCTC---TCTCGCTCTCCTCGCGT 96195
Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226
| | | | || ||||| || ||||| || ||||||||| | ||||| | || || ||
Sbjct 96194 GTCGCTATTATCGGACCTAACGGTGCTGGCAAGTCTACCTTGATCAAGCTGCTCACCGGT 96135
Query 280227 GAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|||||| |||| | || ||| |||||| |||||| |||| || | ||| |
Sbjct 96134 GAGACCATTCCCACCGTTGGCAAGGTTGAGAAGCACCCCAACCTGCGTATCGGCTACATT 96075
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346
||||| ||| | | ||| |||||| ||| |||| | ||| || ||||| || |
Sbjct 96074 AAGCAGCATGCTCTGGAGCACGTCGAGATGCACTTGGAGAAGACCCCCAACCAGTATCTG 96015
Query 280347 CAGTGGCGCTA 280357
|||||||| ||
Sbjct 96014 CAGTGGCGATA 96004
>seq179
Length=68607
Score = 102 bits (112), Expect = 2e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| ||||| |||||||| ||||| |||||| ||||| |||| | | ||
Sbjct 48580 CTCACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 48521
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 48520 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 48462
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| ||||| ||||||
Sbjct 48461 GACTCTCTGGGTGCTCTG 48444
>seq246
Length=51316
Score = 98.7 bits (108), Expect = 2e-15
Identities = 522/827 (63%), Gaps = 25/827 (3%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| | ||||| || |||||||||||| |||||||| |
Sbjct 22975 TCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCA 23034
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | ||| || || || | | || || || |||||||| |
Sbjct 23035 GACTTGTAGATCTTCTCGTTGCCTAGAGCGACAAGCAGACGATCGGCAACAAACTCAATG 23094
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| |||||| | ||||||||||||| || || || | ||||| | |
Sbjct 23095 TACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCAGGGGAGAGCCTCGGTCAAG 23154
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGAG 251797
|| |||| || | || || || | || | |||||| ||| ||
Sbjct 23155 AACTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACGGATCACCTCCTTGCTAGC- 23213
Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857
|| | |||| || | |||| ||| || | |||| | ||||||||||||||
Sbjct 23214 ACGG----TTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGT 23269
Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917
| ||| ||||| ||||||||| | ||| |||||||| | || || ||| ||||||
Sbjct 23270 CACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCC 23329
Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977
||||||| | | ||||| || ||| | | ||||||||| | | ||||| |
Sbjct 23330 AGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACCA 23389
Query 251978 GGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031
|||||| ||||| || ||||||||| | |||| ||||| | ||||
Sbjct 23390 GGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGATGGCCCAGTCGGCCT 23446
Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091
|||| | || || || || || || || | ||||| || | |||| | | |
Sbjct 23447 TCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCT 23506
Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151
||| |||| | || | || || ||||| |||| || |||||| || | | |
Sbjct 23507 CCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGA 23566
Query 252152 TCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208
||||| | | |||| || || | ||| || || | ||| || | ||| |
Sbjct 23567 TCTGGAAGCCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTCGCCGCTGAAGCGCT 23623
Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268
| | |||||| | || |||||||| | | ||||||||| | || ||| ||
Sbjct 23624 CGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGA 23683
Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328
|||||| ||| || || || || || | ||| ||| | |||| ||||
Sbjct 23684 TGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTTGGACAGAT 23743
Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375
|| ||||| | |||||||| | || | ||||| |||||||||
Sbjct 23744 CAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATT 23790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027816098082052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |