Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq48 120 6e-22 seq179 102 2e-16 seq246 98.7 2e-15 >seq48 Length=127510 Score = 120 bits (132), Expect = 6e-22 Identities = 434/671 (65%), Gaps = 15/671 (2%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| | || ||||| | | Sbjct 96668 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTCGCCCTGGCCCGAGCCATGTTGAAG 96609 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| ||| | || || || || |||||| |||| |||||| | || Sbjct 96608 GGTGCCGATGTCCTCCTGTTGGACGAACCTACTAACCACTTGGATGTTACCAACATTGCT 96549 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGA--AGAATGTTTCTTCCCTCATTGTCTCTCACG 279873 ||||| | | |||||| | |||| | | || | | ||||| ||||||| Sbjct 96548 TGGCTGGAGAACTACCT--CAAGTCGCACCCCGACATTACCAGTTTGATTGTGTCTCACG 96491 Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933 ||||||||||| | || ||| | | | ||| |||||||||| || ||||| Sbjct 96490 ACTCTGGCTTCTTGGACAACGTTACCACCGACATTTACCACTATGAGCCCAACAAGAAGC 96431 Query 279934 TCTCCAAGC-ACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 || || || ||| || ||||| | || ||||| ||||| ||||| | Sbjct 96430 TC-GCATGCTACAAGGGTAACCTTGCGGCGTTCGTCCAGCTTCGCCCCGAGGCCAAGAGC 96372 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| ||| || ||| || | ||| | |||||| || || | || Sbjct 96371 TACTACACTCTGTCGGCATCCAACGTCCAGTTCAAGTTCCCTCCTCCTGGTATCCTCACT 96312 Query 280053 GGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCC 280112 || |||| || || ||| || ||||| | | |||||| | | || ||| Sbjct 96311 GGTATCAAGTCTCAGACTCGTGCCATCATTCGCATGAGCAACGTCTCTTACACCTACCCC 96252 Query 280113 AATGGCCCCAA--CATC---TTCAGCAGTGTC-AACTCGCAGGTTTCTATGAACTCACGG 280166 || | |||| |||| ||||| ||||| ||| | | || | ||| || Sbjct 96251 AAGGCTACCAAGCCATCGCTTTCAGACGTGTCTTGCTCTC---TCTCGCTCTCCTCGCGT 96195 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 | | | | || ||||| || ||||| || ||||||||| | ||||| | || || || Sbjct 96194 GTCGCTATTATCGGACCTAACGGTGCTGGCAAGTCTACCTTGATCAAGCTGCTCACCGGT 96135 Query 280227 GAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 |||||| |||| | || ||| |||||| |||||| |||| || | ||| | Sbjct 96134 GAGACCATTCCCACCGTTGGCAAGGTTGAGAAGCACCCCAACCTGCGTATCGGCTACATT 96075 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 ||||| ||| | | ||| |||||| ||| |||| | ||| || ||||| || | Sbjct 96074 AAGCAGCATGCTCTGGAGCACGTCGAGATGCACTTGGAGAAGACCCCCAACCAGTATCTG 96015 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 96014 CAGTGGCGATA 96004 >seq179 Length=68607 Score = 102 bits (112), Expect = 2e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| ||||| |||||||| ||||| |||||| ||||| |||| | | || Sbjct 48580 CTCACTCCCGCATGCGCGGTCTGTCTGGTGGCCAGCGTGTCAAGACTGTCCTGGCTGCTT 48521 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | || ||| ||||||| || ||||||||||||||||||||||| || Sbjct 48520 GCTCT-TGGCAGCGACCCCACTTGATCGTCCTTGACGAGCCTACCAACTATCTGGATCGT 48462 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||||| |||||| Sbjct 48461 GACTCTCTGGGTGCTCTG 48444 >seq246 Length=51316 Score = 98.7 bits (108), Expect = 2e-15 Identities = 522/827 (63%), Gaps = 25/827 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | ||||| || |||||||||||| |||||||| | Sbjct 22975 TCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCA 23034 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| || || || | | || || || |||||||| | Sbjct 23035 GACTTGTAGATCTTCTCGTTGCCTAGAGCGACAAGCAGACGATCGGCAACAAACTCAATG 23094 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||||||| || || || | ||||| | | Sbjct 23095 TACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCGCAGGGGAGAGCCTCGGTCAAG 23154 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGAG 251797 || |||| || | || || || | || | |||||| ||| || Sbjct 23155 AACTCCTGCTCAATTCGGACAGCATCAGTGATGATGTCACGGATCACCTCCTTGCTAGC- 23213 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 || | |||| || | |||| ||| || | |||| | |||||||||||||| Sbjct 23214 ACGG----TTCTTGAGGTGAGAGTGCAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGT 23269 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| ||||| ||||||||| | ||| |||||||| | || || ||| |||||| Sbjct 23270 CACGAGAGATGAGCTCGTTGGAAAAGGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCC 23329 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | | ||||| || ||| | | ||||||||| | | ||||| | Sbjct 23330 AGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCAACCA 23389 Query 251978 GGCGCTCAGCAAACGA------CTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031 |||||| ||||| || ||||||||| | |||| ||||| | |||| Sbjct 23390 GGCGCTGGGCAAAGGAAGAGTTCTTGTCCTG---GATCCACTTGATGGCCCAGTCGGCCT 23446 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 |||| | || || || || || || || | ||||| || | |||| | | | Sbjct 23447 TCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCT 23506 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| |||| | || | || || ||||| |||| || |||||| || | | | Sbjct 23507 CCTTGATGTAGGTGTCGATGAGCAGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGA 23566 Query 252152 TCTGGTAAGCATAGA---ATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGT 252208 ||||| | | |||| || || | ||| || || | ||| || | ||| | Sbjct 23567 TCTGGAAGCCGTAGAAGCATCGAGCCTCGG--GGATCTG-GACCTCGCCGCTGAAGCGCT 23623 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 | | |||||| | || |||||||| | | ||||||||| | || ||| || Sbjct 23624 CGACCAGGTTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAAGGCCAGGATGTGAGAGA 23683 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 |||||| ||| || || || || || | ||| ||| | |||| |||| Sbjct 23684 TGAAGTACTTCTCGTCATCATTCAGGCGGTTATTCCAATCGTGCAGATCCTTGGACAGAT 23743 Query 252329 GAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATT 252375 || ||||| | |||||||| | || | ||||| ||||||||| Sbjct 23744 CAATCTCTTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATT 23790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027816098082052