Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq246 199 7e-46 seq301 179 7e-40 seq330 167 4e-36 seq179 129 1e-24 seq61 109 1e-18 seq236 84.2 4e-11 >seq246 Length=51316 Score = 199 bits (220), Expect = 7e-46 Identities = 564/859 (66%), Gaps = 7/859 (1%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || |||||||||||||| |||||| Sbjct 22936 TTCATGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCA 22995 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 |||| |||||| ||||||||||||||||||||| | | | ||| || Sbjct 22996 CCGAGAGAAATGTTCTCCATGAAGTCAAAGGGGTTGGCAGACTTGTAGATCTTCTCGTTG 23055 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || | | || || || || ||||| |||||||| ||||||||| ||| Sbjct 23056 CCTAGAGCGACAAGCAGACGATCGGCAACAAACTCAATGTACTGCTTCATCAGGTTGGAG 23115 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||| || | |||||||| || ||| | ||| |||| || | ||| Sbjct 23116 TTCATGCCAAGCAGGGCGCAGGGGAGAGCCTCGGTCAAGAACTCCTGCTCAATTCGGACA 23175 Query 10173 GCTTCCTCGACGATGCTCTTTACCACGTCAAGGGACAGC-TTGTTCTCGAGCTTCGAATA 10231 || || || |||| | ||| || | ||| ||||| ||| | || | Sbjct 23176 GCATCAGTGATGATGTCACGGATCACCTC-CTTGCTAGCACGGTTCTTGAGGTGAGAGTG 23234 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 ||| || |||| | ||| || |||||||| || ||||| ||||||||| || Sbjct 23235 CAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAA 23294 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGA 10351 |||||| |||||||| || || || |||||||| |||| | || | ||| Sbjct 23295 GGTCAGACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCT 23354 Query 10352 GAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTC-- 10408 ||| | | |||||| ||| | |||| || ||||||| || |||| || | || Sbjct 23355 GAAGAAGATACCCTCGACGGCAGCAAAGGCAACCAGGCGCTGGGCAAAGGAAGAGTTCTT 23414 Query 10409 GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGAT 10468 | | | | || |||||| | |||||||| | | | ||| || ||||| || Sbjct 23415 GTCCTGGATCCACTTGATGGCCCAGTCGGCCTTCTTGCGAATGCAAGGAATGGTCTCAAT 23474 Query 10469 AGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGA 10528 || | |||||| | | | |||| | | | |||| || | || | ||||||||| Sbjct 23475 GGCGTTGAAGAGGTAGCTGCGCTGGCTGTTCTCCTTGATGTAGGTGTCGATGAGCAGGGA 23534 Query 10529 GTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCG 10587 ||| |||| ||||| | |||| | |||| | ||||||| ||| || ||| Sbjct 23535 GTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGAGCCT 23593 Query 10588 AGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGC 10647 |||| | ||| || || ||| | | ||||||||| | || |||||||| Sbjct 23594 CGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCATCAG 23653 Query 10648 TGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTT 10707 | | ||||||||| | |||||||| |||||||| ||| ||||| ||||| | Sbjct 23654 AGGCGGCAAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCATTCAGGCGGT 23713 Query 10708 CACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAA 10767 | ||| || || ||||| | || | | ||| || |||||||||| | ||| Sbjct 23714 TATTCCAATCGTGCAGATCCTTGGACAGATCAATCTCTTCGGCGGTCCAGAAGGAGGCTT 23773 Query 10768 CGGCCTTCTTGTACATCTG 10786 ||||||| |||||||| || Sbjct 23774 CGGCCTTTTTGTACATTTG 23792 >seq301 Length=43884 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || || ||||| || |||||||| || |||||| Sbjct 7508 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 7567 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || | || || ||||| || ||| Sbjct 7568 AGAGTTCGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGA 7627 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 7628 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 7687 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 7688 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 7734 >seq330 Length=39978 Score = 167 bits (184), Expect = 4e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||||| || |||||| Sbjct 15198 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 15257 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || |||| || ||||| || || Sbjct 15258 AGGGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAGTCGCTGCTGGTCAGGAGGG 15317 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| |||||||| || | ||| || || Sbjct 15318 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCCACC 15377 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 || | ||||||||| ||||| |||||||||||||||| || Sbjct 15378 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGACTA 15417 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || |||||||| || |||||||| || ||||| Sbjct 15484 CCACCACGAAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15543 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || || | || ||||| || ||| Sbjct 15544 AGAGTTCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCAGGAGGA 15603 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| | ||| || |||||||| || | || || || Sbjct 15604 ATGCCTTCCTTATCCTGGATCTTGGACTTCACATTGTCGATGGTATCGGAAGACTCGACC 15663 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| || ||||| Sbjct 15664 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 15710 Score = 149 bits (164), Expect = 1e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || || || |||| |||||||| || ||| ||| || |||||||| | Sbjct 14734 TTTACTGGCCACCACGCAGACGCAGGACCAAGTGCAGTGTGCTCTCCTTCTGGATGTTGT 14793 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | ||| | || | || ||||| | |||||| || || || || | | || |||| Sbjct 14794 AGTCGCTCAAGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGT 14853 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || |||||||| |||||||| |||||||| | ||||||| ||||||||||| | | Sbjct 14854 CAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 14913 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || | |||||| || || || || || ||||||||||| |||||||| Sbjct 14914 ATTCCACCTCGAGGGTGATTGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 14968 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || ||| ||| || |||||||| || ||| Sbjct 14970 CCACCACGAAGACGGAGGACAAGGTGAAGTGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 15029 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || || || | || || || || ||| Sbjct 15030 AAGGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGATCCGGGGGA 15089 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||||| ||||| ||||||||||||| |||||| || Sbjct 15090 ATACCCTCCTTGTCCTGAATCTTTGATTTGACATTGTCGATGGTGTCTGATGATTCAACC 15149 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || | ||||||||||| |||||||| Sbjct 15150 TCCAATGTGATGGTCTTGCCGGTCAACGTCTTGACGAAGATCTGCAT 15196 >seq179 Length=68607 Score = 129 bits (142), Expect = 1e-24 Identities = 674/1056 (64%), Gaps = 80/1056 (8%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| |||||||| ||||| ||| || || Sbjct 48973 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCAAGGTGGTTATCAATGTGGGCAAAGGCG 49032 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| ||||| | | | | | ||| || Sbjct 49033 TGCTGCTTGATGTAGGCGATACGGATGTTCTCATGCTGGTAGATCTCACCACCGGTGGGG 49092 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || ||| ||| || ||||| || |||| |||||| ||||| ||||| || || Sbjct 49093 ATGAGC-TCACCGCAGAGAACGTTGATCAGGGTAGACTTGCCGGCACCGTTGGGACCGAT 49151 Query 225160 CACGCCAATCCGGGAT------GA-CATTGCAACCTGCGAGTTCACGTTGCTGAAGATCT 225212 ||| |||| || || || || || || ||| | || | ||| | | Sbjct 49152 AACGGCAATACGAGAGCCAAGAGAGCACTGGAAGCTG--ATCTCCTGGATCTGGGGCTTG 49209 Query 225213 CAGGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGGT 225266 ||| | | |||| |||| || | ||||||| |||||| | Sbjct 49210 GAGGTACCGG--GGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTTGG 49261 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 49262 CCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCCATCTCGGAGG 49321 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGT 225383 | || |||||||| || || || ||||| ||||| | ||||| Sbjct 49322 CACCGAGCTCGTAGTAGGACTTGGCGGAAGGAACACGCTTG---ACGAACTCCTTCAGGT 49378 Query 225384 TTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACT 225442 | || ||| | ||||||||| || |||||| ||||| || ||| | ||| || Sbjct 49379 TACCACGGTAACGCTTGAGCTTGAA--TCG-CTCGTAGTGAACGATGTGCTG-GCAAACG 49434 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTT 225501 ||||||||||||||||||||| || || |||||||| | || | | || | Sbjct 49435 TTGTCAAGGAAGCCAGAGTCGTGAGAGACGATGATGGAAGTGCAGGGGGAGCTGG----T 49490 Query 225502 GAGGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560 ||||| || | |||||| ||||| | ||||||| |||||| ||||| ||||| | Sbjct 49491 GAGGTA-GTCCTCGAGCCACTTGACGTTCTTCACGTCCAAGTGGTTAGTAGGCTCGTCGA 49549 Query 225561 GAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGC 225620 | ||||| || |||| | || || || || |||| |||||||| ||||| | Sbjct 49550 GCAGCAGAATATCAGGGGCCTCGAAGACAGCACGGCACAGAGCGAGCTTCATCTTCCAAC 49609 Query 225621 CCCCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCT------TCGTCAAAGCCGTACT 225674 | || ||||||| | |||| | |||| | ||| ||||||| ||| Sbjct 49610 CACCAGACAGGGCG------GAAATCTCGCCCTTAACCATCTGCTCGGTAAAGCCGAACT 49663 Query 225675 C---CAGGAGCGTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGG 225731 | |||| || ||| || | | || | | || || | || |||| |||| Sbjct 49664 CGTCCAGGCGCTTCTCGACA-TCAGCCTGAGTGA--------CGTCGACCTTGGCCTCGG 49714 Query 225732 ACGAGA--------GGT--AATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCG 225781 | || ||| | || |||||| || | ||| | ||| | |||| Sbjct 49715 -CAAGCTTCTTCATGGTCCAGTCGATGGTGGTCATCTCGGTATCAGCGGAGTCGAGGTCG 49773 Query 225782 TGGTCCACGTACACCGTCCGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATT 225840 || || ||| | || ||| || | | || | |||||| ||||| | ||| | || Sbjct 49774 TGCTCAACGAAGACAGTCTTGACTTCGCTCTGCTT-GGGGAAACCCTCGACCTGCTCGTT 49832 Query 225841 TGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATG 225900 || ||||| | || ||| |||||| | |||||||||||| || |||||| | Sbjct 49833 GTTGATGGCACGCATGAGAGTAGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAACG 49892 Query 225901 ATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAG 225960 | || ||||||| | |||| | || ||| || ||||||||| ||||||||||||| Sbjct 49893 CTGACCACGCTTGAGGCGGAGGTGGGTCTGGTTGAGCAGGATCTTGGCACCATAGGCAAG 49952 Query 225961 GGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 ||||| ||| | ||| |||||||| |||||||| Sbjct 49953 AGAGAATGTGCAGTTGCAAAGGTCCTCGCCCTCCTC 49988 >seq61 Length=119690 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| || ||| | || | | || ||||| || ||||||| || ||| Sbjct 2912 TCTTCCAGCTGCTTACCAGCGTAGATCAAGCGCTGCTGGTCAGGGCGAATGCCCTCTTTG 2853 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||| | ||||||| ||||||||||| | ||||| || | | |||||| Sbjct 2852 TCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGATTCCACCTTGAGGGTGATT 2793 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || |||| |||||||||||| ||||| || Sbjct 2792 GTCTTGCCGGTGAAGGTCTTGACGAAAATCTGTAT 2758 >seq236 Length=53426 Score = 84.2 bits (92), Expect = 4e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31406 AGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGC 31465 ||| ||||| | || ||| ||| || |||||||||| | | ||| || | || Sbjct 6311 AGAAGCCTCAAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGC 6252 Query 31466 CGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACC 31525 | || ||| ||||| ||||||||||| | ||| |||| ||||||||||||||| Sbjct 6251 CTCGGGAGACTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACC 6192 Query 31526 CACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACAT 31585 || ||||| || || ||||||| || || | ||||| | | | |||| | Sbjct 6191 AACGCCAATGGGTCGGTGGCGCATATTGCTGTTGCGGGCCTCCTGGACAGGGTAGTGGTT 6132 Query 31586 GACGTCAATGCTCTTGTCGAGGTT 31609 ||| |||||| |||||| |||||| Sbjct 6131 GACATCAATGATCTTGTTGAGGTT 6108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921604290119840