Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06]
1,572 sequences; 39,721,542 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq246 416 5e-111
seq236 367 2e-96
>seq246
Length=51316
Score = 416 bits (460), Expect = 5e-111
Identities = 619/862 (72%), Gaps = 32/862 (4%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||| ||||| | |||| |||||||||||| |||||||| |||
Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739
Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415
||||||| | || | | ||| | || | |||| || |||| |||| ||| ||
Sbjct 23738 TCCAAGGAT-CTGCACGATTGGAATAACCGCCTGAATGATGACGAGAAGTACTTCATCTC 23680
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|||| ||||||||||| ||||||||||| ||||| ||||| |||||||||| | |
Sbjct 23679 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 23620
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||| ||||| ||| | ||||| || |||||||||||||||||||| ||
Sbjct 23619 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 23560
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592
|||||| | ||||| ||| ||| || ||||||| |||| |||||| |||
Sbjct 23559 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACATCAAGGAGAA 23503
Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652
| | |||| | | || ||||| ||||| ||||| || || ||||| ||||||||
Sbjct 23502 CAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 23443
Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAG 42711
|||||||| |||| |||||| || | | | || | | || | | || | ||||| |
Sbjct 23442 CGACTGGGCCATCAAGTGGATCCAG-GACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTG 23384
Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771
||||| | ||||||||||| ||||||||| || ||||| |||||||||||||||||||
Sbjct 23383 CCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 23324
Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830
|| || |||| || ||||| || || ||||| || ||||| |||||| | ||||||
Sbjct 23323 AGAAGCGAGGTCTC-ATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 23265
Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890
|| ||||| | |||||||||||||| ||| ||| ||||||| | || | || |
Sbjct 23264 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTC---TCACCTCAAGAAC-CGTGCTAG 23209
Query 42891 -AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949
|||||| | |||| | ||||||||| || || || || ||| |||||||| | ||
Sbjct 23208 CAAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149
Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009
|| | || ||| ||||| | ||||||||| | |||| ||| ||||||| |
Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 23089
Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACAC 43063
|| || ||||| | ||| || || | | ||| || || ||||||| |
Sbjct 23088 GTTTGTTGCCGATCGTCTGCT-TG-----TCGCTCTAGGCAACGAGAAGATCTACAAGTC 23035
Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123
| |||||| ||||| ||||||||||| || | | |||||||||||||| |||||
Sbjct 23034 TGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGA 22975
Query 43124 GAAGCGCGTCGCCGACTACCAG 43145
||||||||||||||||||||||
Sbjct 22974 GAAGCGCGTCGCCGACTACCAG 22953
>seq236
Length=53426
Score = 367 bits (406), Expect = 2e-96
Identities = 1126/1717 (66%), Gaps = 73/1717 (4%)
Strand=Plus/Minus
Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800
||||||||| || || | ||||||| || | |||||||||||||||||||||||| |
Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874
Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860
|| |||| | || ||||||| || | ||| ||| | |||| |
Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGGA--T 6823
Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920
||| || || ||| ||||||||| ||| || | ||| | | || || || |
Sbjct 6822 CCTT---CATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCG 6766
Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980
|||| || | | |||||| ||||| | | |||||||| | | ||||| |
Sbjct 6765 CCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATAT 6706
Query 243981 GCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038
||||||| || | |||||||| | ||||| || | | |||| || |
Sbjct 6705 CTTCGGGGATG--TTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTT 6648
Query 244039 CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCA 244094
|||| |||| ||| ||||| | |||| ||| || ||||| | || |
Sbjct 6647 CATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGA 6592
Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154
| ||||| ||||| || | || || || |||||||||| |||| || |||||||
Sbjct 6591 CAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGA 6532
Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214
|| ||| |||| ||||| ||||| | ||| || ||||| ||||| || | | ||||
Sbjct 6531 AGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCA 6472
Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274
||||| | | |||||| || ||| | ||||| || ||| ||||||| |
Sbjct 6471 AGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGT 6412
Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC-TGACG 244333
| ||||| |||||| |||||||||| || || || | |||| | || |
Sbjct 6411 C--AGAGG-------GTTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAG 6361
Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTC 244392
| | | |||| | | | ||||||||| || || ||| | || | || | ||
Sbjct 6360 GTGAT-CCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCC-TC 6303
Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA 244452
||||| || | |||||||||||| |||||| |||||||| | || |||| | |
Sbjct 6302 AAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGA 6243
Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512
||||| |||| || | ||| ||||||| || ||||| || || | ||| ||
Sbjct 6242 CTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAAT 6183
Query 244513 GGGTCTGTGTCGC---TTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569
||||| ||| ||| ||| || ||| ||| || | || ||||| |||| | ||
Sbjct 6182 GGGTCGGTGGCGCATATTGCTGTTGCG---GGCCTCCTGGACAGGGTAGTGGTTGACATC 6126
Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629
|| | |||||||||||||||| | || | ||| || ||| || ||||||
Sbjct 6125 AATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTC 6066
Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689
|| | | ||| | | || ||| || || | | |||||| | |||
Sbjct 6065 ATA-------GCAGCCTTCG---TTGTAATCGACATAAGCAGG--GAGGGCCAAAGAGGC 6018
Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749
|| |||||| || || ||||| || | ||||| || ||||||||||||||||||
Sbjct 6017 CAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTT 5958
Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTA 244809
|| |||||| ||||||| || || ||| |||| ||||||||| ||||||||
Sbjct 5957 GGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTA 5898
Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCT 244869
|||||||||||| || |||||| |||||| | |||| | | ||| || | |
Sbjct 5897 GAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTG 5838
Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929
||| | ||| ||||| | ||||| |||||| |||| ||||||||
Sbjct 5837 AGCGCGAATAGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAA 5778
Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCAC 244987
||| ||| || || | ||||| ||||| || | ||||||||||| ||||
Sbjct 5777 CTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTG--GGGCACATGAGCGTCCAG 5720
Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047
|| | | || || | || ||||||||| ||||| |||||||| || |||| | |
Sbjct 5719 TCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG 5660
Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107
|| | | | ||| ||| ||| |||||| | || || | || |||||||||
Sbjct 5659 TCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACG 5600
Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167
||| ||||||| ||||| | ||||| || | ||| || || |||||||| || ||||||
Sbjct 5599 TCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGG 5540
Query 245168 TCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225
| || ||| ||| | || | |||||||| || || | || | || |||||||||
Sbjct 5539 T-CAACAT-ATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGG 5482
Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA----CATG 245281
||||||||||| ||||| | ||| || | | || ||| |||||| || |
Sbjct 5481 TACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGC-GATGGACGTTCAAG 5426
Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341
|| | || || || |||||| || | ||| || |||| | ||||| || |||
Sbjct 5425 CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCC 5366
Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCT 245400
|| ||||| || |||||||| || || ||||| |||||||||| ||||||| ||| |
Sbjct 5365 TCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-GGGCTTGCGGGGT 5307
Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437
| | ||||||||| ||||| ||| || || |||
Sbjct 5306 ACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAG 5270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944320643734720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |