Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20harzianum_20[genbank_20GCA_5F000988865.1_202015-05-06] 1,572 sequences; 39,721,542 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq246 416 5e-111 seq236 367 2e-96 >seq246 Length=51316 Score = 416 bits (460), Expect = 5e-111 Identities = 619/862 (72%), Gaps = 32/862 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| | |||| |||||||||||| |||||||| ||| Sbjct 23798 ATCTGGCAAATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAAGAGATTGATCTG 23739 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 ||||||| | || | | ||| | || | |||| || |||| |||| ||| || Sbjct 23738 TCCAAGGAT-CTGCACGATTGGAATAACCGCCTGAATGATGACGAGAAGTACTTCATCTC 23680 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| ||||||||||| ||||||||||| ||||| ||||| |||||||||| | | Sbjct 23679 TCACATCCTGGCCTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAACCTGGTCGAGCG 23620 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| || |||||||||||||||||||| || Sbjct 23619 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGATGCTTCTACGGCTTCCAGATCATGAT 23560 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| || ||||||| |||| |||||| ||| Sbjct 23559 GGAGAACATCCACTCCGAGACCTACTCC---CTGCTCATCGACACCTACATCAAGGAGAA 23503 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| | | || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 23502 CAGCCAGCGCAGCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 23443 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| |||| |||||| || | | | || | | || | | || | ||||| | Sbjct 23442 CGACTGGGCCATCAAGTGGATCCAG-GACAAGAACTCTTCCTTTGCCCAGCGCCTGGTTG 23384 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| | ||||||||||| ||||||||| || ||||| ||||||||||||||||||| Sbjct 23383 CCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 23324 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || |||| || ||||| || || ||||| || ||||| |||||| | |||||| Sbjct 23323 AGAAGCGAGGTCTC-ATGCCTGGTCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 23265 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || ||||| | |||||||||||||| ||| ||| ||||||| | || | || | Sbjct 23264 GGTCTGCACACTGACTTTGCCTGCCTGCTGCACTC---TCACCTCAAGAAC-CGTGCTAG 23209 Query 42891 -AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 |||||| | |||| | ||||||||| || || || || ||| |||||||| | || Sbjct 23208 CAAGGAGGTGATCCGTGACATCATCACTGATGCTGTCCGAATTGAGCAGGAGTTCTTGAC 23149 Query 42950 GCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCA 43009 || | || ||| ||||| | ||||||||| | |||| ||| ||||||| | Sbjct 23148 CGAGGCTCTCCCCTGCGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGA 23089 Query 43010 GTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACAC 43063 || || ||||| | ||| || || | | ||| || || ||||||| | Sbjct 23088 GTTTGTTGCCGATCGTCTGCT-TG-----TCGCTCTAGGCAACGAGAAGATCTACAAGTC 23035 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGA 43123 | |||||| ||||| ||||||||||| || | | |||||||||||||| ||||| Sbjct 23034 TGCCAACCCCTTTGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGA 22975 Query 43124 GAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||||||||||| Sbjct 22974 GAAGCGCGTCGCCGACTACCAG 22953 >seq236 Length=53426 Score = 367 bits (406), Expect = 2e-96 Identities = 1126/1717 (66%), Gaps = 73/1717 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| || || | ||||||| || | |||||||||||||||||||||||| | Sbjct 6933 TGAACTGGATAGGAGCAGCCGCGGCCTGAGTACGCAGGTAGTACATGCCGGTCTTGAGAC 6874 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 || |||| | || ||||||| || | ||| ||| | |||| | Sbjct 6873 CAAGCTTCCAGCCAGTGAAGTGCATGCTGGTAATCTTGCCCAT-------TGTGGGA--T 6823 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGG 243920 ||| || || ||| ||||||||| ||| || | ||| | | || || || | Sbjct 6822 CCTT---CATGTGGATGTTCAGGGACTGGGACTGATCAATGAAAGCACCACGATCAGCCG 6766 Query 243921 CCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGT 243980 |||| || | | |||||| ||||| | | |||||||| | | ||||| | Sbjct 6765 CCATCTGGACAATTTGGCGCTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATAT 6706 Query 243981 GCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038 ||||||| || | |||||||| | ||||| || | | |||| || | Sbjct 6705 CTTCGGGGATG--TTGGGAATGTTCTGAATGGAGCCGTTCTCAGCAATGATACGGTTCTT 6648 Query 244039 CATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGA----CCAGGTGCCTGTTCA 244094 |||| |||| ||| ||||| | |||| ||| || ||||| | || | Sbjct 6647 CATGGCATCGGACCAGAGGCCAGTGTCGACCAGGTCCTTGAGAAGCCAGGGG----TTGA 6592 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | ||||| ||||| || | || || || |||||||||| |||| || ||||||| Sbjct 6591 CAACCTGGAACTCGCCGGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGA 6532 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || ||| |||| ||||| ||||| | ||| || ||||| ||||| || | | |||| Sbjct 6531 AGCACTCGTTGTTACCCAGAATCTGGGACGTACTGGCAGTTGGCATAGGGGCGAGGAGCA 6472 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 ||||| | | |||||| || ||| | ||||| || ||| ||||||| | Sbjct 6471 AGCTGTTGCGCGTACCGTGCTCCTTGATCTGCTCCTTGAGCGAGTCCCACTCCCACAGGT 6412 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC-TGACG 244333 | ||||| |||||| |||||||||| || || || | |||| | || | Sbjct 6411 C--AGAGG-------GTTTGACATCCCACATGTCGAATTGGAGGATGCCCTCGGATGCAG 6361 Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTC 244392 | | | |||| | | | ||||||||| || || ||| | || | || | || Sbjct 6360 GTGAT-CCCTTGAATGATTCGTAGGGACCCTCCACCTTGGCGATCTCCATAGAAGCC-TC 6303 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA 244452 ||||| || | |||||||||||| |||||| |||||||| | || |||| | | Sbjct 6302 AAGGGCCGCATGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGAGCCTCGGGAGA 6243 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 ||||| |||| || | ||| ||||||| || ||||| || || | ||| || Sbjct 6242 CTCAAAGGGCATGCGCAGGGCAAGGAAAGCGTCGGCAAGACCCTGGACACCAACGCCAAT 6183 Query 244513 GGGTCTGTGTCGC---TTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 ||||| ||| ||| ||| || ||| ||| || | || ||||| |||| | || Sbjct 6182 GGGTCGGTGGCGCATATTGCTGTTGCG---GGCCTCCTGGACAGGGTAGTGGTTGACATC 6126 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629 || | |||||||||||||||| | || | ||| || ||| || |||||| Sbjct 6125 AATGATCTTGTTGAGGTTGCGGACAACCACCTTGGTGACTTCATGAAGCTTCTTAAAGTC 6066 Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689 || | | ||| | | || ||| || || | | |||||| | ||| Sbjct 6065 ATA-------GCAGCCTTCG---TTGTAATCGACATAAGCAGG--GAGGGCCAAAGAGGC 6018 Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749 || |||||| || || ||||| || | ||||| || |||||||||||||||||| Sbjct 6017 CAAGTTGCAAACAGCAACCTCATCTGGAGCACAGTACTCGATAATCTCGGTGCAGAGGTT 5958 Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTA 244809 || |||||| ||||||| || || ||| |||| ||||||||| |||||||| Sbjct 5957 GGAGCTGCGGATGGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTA 5898 Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCT 244869 |||||||||||| || |||||| |||||| | |||| | | ||| || | | Sbjct 5897 GAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCTTCCAGGATGGAATACCACAGCTTCTG 5838 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 ||| | ||| ||||| | ||||| |||||| |||| |||||||| Sbjct 5837 AGCGCGAATAGTCTTGCGACCACGTCCCTCCCTCTCGTATTTCTCATACAAAGCCTCGAA 5778 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCAC 244987 ||| ||| || || | ||||| ||||| || | ||||||||||| |||| Sbjct 5777 CTCCTCGCCATAGCAGTCAGCCAGGCCAGGGCATTCGTTG--GGGCACATGAGCGTCCAG 5720 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || | | || || | || ||||||||| ||||| |||||||| || |||| | | Sbjct 5719 TCCAAGTTCTTCTCAACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCAAGGAACAAG 5660 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | | | ||| ||| ||| |||||| | || || | || ||||||||| Sbjct 5659 TCGCGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAACTCAAAGACG 5600 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 ||| ||||||| ||||| | ||||| || | ||| || || |||||||| || |||||| Sbjct 5599 TCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGG 5540 Query 245168 TCCACCATCCTCTCG-AGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 | || ||| ||| | || | |||||||| || || | || | || ||||||||| Sbjct 5539 T-CAACAT-ATCTGGCAGTGTTGTTGAAGACTCGAAGCATGGGAATAATACCGTTAGAGG 5482 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGA----CATG 245281 ||||||||||| ||||| | ||| || | | || ||| |||||| || | Sbjct 5481 TACCGTTGGTGCCAGCAATGTAAGAGCCGGTGGCAC---GGATGC-GATGGACGTTCAAG 5426 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | || || || |||||| || | ||| || |||| | ||||| || ||| Sbjct 5425 CCGATACCACCAGCCATCTTGGAAATCATGGCACATGTCTTCAGAGTGTCATAGATACCC 5366 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCT 245400 || ||||| || |||||||| || || ||||| |||||||||| ||||||| ||| | Sbjct 5365 TCGATGCTATCGTCCTTCATGTCGACCAAGAAGCATGAGGACAGCT-GGGCTTGCGGGGT 5307 Query 245401 GCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | ||||||||| ||||| ||| || || ||| Sbjct 5306 ACCTGCGTTGAACAGGGTGGGAGAGGCATGAGTGAAG 5270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944320643734720